Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03337 ATGGAGGGTACCCTTTTTCCCAATAGGCCAGTTTTGCCTCCTCCTTCACACAAACCACAACAGCCTTTGAAATTCAAGCCTACTTTTTTGCCTCCACTGTCTCCCCCAGCTTCTCCTTCTTTTCAGTTTGATTCTCTTCTTCAACATCTTCAGCATCTCTCTTCTGTTCCCATCATCACTCACACCCTCACACTTTTGCCCCCTTCTGATGATAATTCCTCCTGTTTTGATCATTCCCTTCCTTCAAAGCACCCCCCTTCGGATTCTGCCTCCATTGCTGATCAGGGCCTTTTTGATGATAAAAAGTTTGGATTTTTATCTGAGAAAGGTAAGTTGATGCTCAGTTCAATTGTTGGGTCTCCTTTGCATGAATTGAATGACTTTTTCAACTCTGGTAAGTTTGAGTTGCTTGAGGTTGATTTTCCCAGTTTGTTGAAAGCTTTGGACCTTTCCGGGAACTGGGAAAGGGCACTTTTGTTCTTTGAGTGGGGTTGGTTGCATTTGGGGAGGGATCAAAATATGAGGTTGGATAATCAGGTTGTTGAATTGATGGTTAGGATATTGGGGAGGGAGTCGCAGCATTCAATTGCATCCAAGTTGTTTGATTTAATTCCTGTGGAAAAATACTCGCTTGATGTACGGGCTTACACCACCATTCTTCATTCGTATGCTCGCACTGGGAAGTATAAACGGGCTATTGACTTGTTTGAGAAGATGAACGAGGTTGGTCTTGATCCAACTTTGGTCACTTACAATGTCATGCTTGATGTTTACGGCAAGATGGGTCGTTCTTGGAGTAGAATCTTGGAGTTGTTGGATGAGATGAGAAGTAAAGGGCTTGAGTTTGATGAGTTTACTTGCAGCACTGTGATCTCTGCTTGTGGAAGAGAGGGTATGCTGGATGAAGCGAAGAAGTTTTTGGCTGAATTGAAATTAAATGGCTATAAACCGGGAACTGTCACGTATAATTCTATGCTGCAGGTTTTTGGAAAGGCTGGAATTTACTCTGAGGCCTTGAACATCTTGAAAGAAATGGAGAAGAATAATTGCCCTCCTGATTCTGTTACTTACAATGAGCTCGCGGCAACATATGTAAGAGCTGGGTTTCTCGATGAAGGGATGGCTGTCATAGATACAATGGCTAGCAAAGGAGTAAAGCCAAATGCTATTACTTATACTACTGTAATAGATGCCTATGGTAAGGCGGGCAGGGAGGACGAGGCATTAAAGTTGTTCAGCCAGATGAAGGACTTGGGTTGTGCTCCTAATGTATACACATACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGGTTAGAAGATATTATTAAGGTTCTCTGTGAGATGAAATTGAATGGATGTGCTCCTAATCGTGCCACATGGAACACCATGCTTGCTGTATGCAGTGAGGAGGGTAAGCACAGTTATGTTAATAAGGTCTTGAGGGAAATGAAAAACTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTGCATATGCTCGGTGTGGAGCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGGTTAAAGCAGGCTTTACACCATGTGTAACAACTTATAATTCTCTTCTAAATGCCCTTGCTCGGCGAGGTGATTGGAAAGCCGCAGAATCTGTCATGCTGGACATGCAGACCAAGGGCTTCAAGCCTAATGAAACTTCATACTCATTGTTGCTCCATTGTTATTCCAAGGCTGGGAATATCAAGGGGATCGAGAAGGTTGAGAAAGAAATTTATGAGGGCCGCGTCTTTCCTAGCTGGATACTTTTGAGAACCCTTGTTCTCTCAAACCACAAGTGCAGACACCTTAGGGGAATGGAAAGGGCATTTGATCAACTGCAGAAGTATGGATACAAACCTGATTTGGTTGTCATTAACTCCATGCTTTCAATGTTTTCCCGAAACAAGATGTTTGCGAAGGCCCGCGAAATGCTGCATTTTATTCACGAAAGTGGATTGCAGCCAAATCTTTTCACCTATAATAGCTTGATCGATTTGTATGTCCGAGAGGGCGAGTGTTGGAAAGCAGAAGAAGTGCTCAAGGGAATTCAAAACTCTGGTCCAGAGCCAGATGTTGTGTCTTATAATACTGTTATCAAGGGATTTTGTAGAAAAGGGCTCATGCAGGAGGCTGTTAGAGTTCTCTCAGAGATGACCACTAAGGGAATTCAACCAACTGTAGTTACATACAATACTTTCCTGTCAGGCTATGTAGGGATGGAGTTGTTTGATGAAGCAAATGAAGTTATTAGATTTATGATTGAGCACAATTGCAGGCCCAGTGAACTAACTTACAAGATTGTAGTTGATGGTTATTGTAAAGCAGGGAAGCATGAAGAAGCCATGGGCTTTGTGTCTAAGATAAAGGAGATTGATATCTCTTTTGATGATAAATCTGTGACAAGGCTAGGTTCTTGTATTAGGGAGAGAGTGGGGTCTACTTTGTAA 2484 0.4235 MEGTLFPNRPVLPPPSHKPQQPLKFKPTFLPPLSPPASPSFQFDSLLQHLQHLSSVPIITHTLTLLPPSDDNSSCFDHSLPSKHPPSDSASIADQGLFDDKKFGFLSEKGKLMLSSIVGSPLHELNDFFNSGKFELLEVDFPSLLKALDLSGNWERALLFFEWGWLHLGRDQNMRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFEKMNEVGLDPTLVTYNVMLDVYGKMGRSWSRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEAKKFLAELKLNGYKPGTVTYNSMLQVFGKAGIYSEALNILKEMEKNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMASKGVKPNAITYTTVIDAYGKAGREDEALKLFSQMKDLGCAPNVYTYNSVLAMLGKKSRLEDIIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHSYVNKVLREMKNCGFEPDKDTFNTLISAYARCGAEVDSAKMYGEMVKAGFTPCVTTYNSLLNALARRGDWKAAESVMLDMQTKGFKPNETSYSLLLHCYSKAGNIKGIEKVEKEIYEGRVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFAKAREMLHFIHESGLQPNLFTYNSLIDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAVRVLSEMTTKGIQPTVVTYNTFLSGYVGMELFDEANEVIRFMIEHNCRPSELTYKIVVDGYCKAGKHEEAMGFVSKIKEIDISFDDKSVTRLGSCIRERVGSTL 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 249 283 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 320 354 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 355 389 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 776 801 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 740 774 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 215 247 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 461 493 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 705 739 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 496 527 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 635 668 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 670 704 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 531 564 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Pste2g03337 827 NCBIfam pentatricopeptide repeat 390 424 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Pste2g03337 827 Gene3D Tetratricopeptide repeat domain 478 608 IPR011990 GO:0005515
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 772 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 773 807 IPR002885 -
Pste2g03337 827 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 263 365 - -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Pste2g03337 827 SUPERFAMILY HCP-like 215 428 - -
Pste2g03337 827 Pfam Pentatricopeptide repeat domain 211 261 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 282 IPR002885 -
Pste2g03337 827 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 141 515 - -
Pste2g03337 827 Pfam PPR repeat 769 799 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Pste2g03337 827 Pfam PPR repeat family 457 506 IPR002885 -
Pste2g03337 827 Pfam PPR repeat family 317 358 IPR002885 -
Pste2g03337 827 Pfam PPR repeat family 702 742 IPR002885 -
Pste2g03337 827 Pfam PPR repeat family 632 678 IPR002885 -
Pste2g03337 827 Pfam PPR repeat family 387 434 IPR002885 -
Pste2g03337 827 Pfam PPR repeat family 527 575 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Pste2g03337 827 MobiDBLite consensus disorder prediction 8 26 - -
Pste2g03337 827 Gene3D Tetratricopeptide repeat domain 363 477 IPR011990 GO:0005515
Pste2g03337 827 Gene3D Tetratricopeptide repeat domain 118 263 IPR011990 GO:0005515
Pste2g03337 827 Gene3D Tetratricopeptide repeat domain 264 362 IPR011990 GO:0005515
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pste2g03337 827 Gene3D Tetratricopeptide repeat domain 609 732 IPR011990 GO:0005515
Pste2g03337 827 Gene3D Tetratricopeptide repeat domain 733 807 IPR011990 GO:0005515
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pste2g03337 827 MobiDBLite consensus disorder prediction 1 26 - -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pste2g03337 827 Pfam PPR repeat 285 314 IPR002885 -
Pste2g03337 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03337 Pste-Chr2 33419071 33421554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03337 353 785 Glycosyltransferase AT1G05670 23.272 1.48e-49 185