Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03333 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGACGACGACGCCGTTTCGTTCCTCCTCAACGACGACGACGATGACGACGCCGCCGTTGGATCCCTCCCCTTCCCCTTCCCCGTTCTGCAAACGGCGCCTTGCGGCTTCGTCGTCACCGACGCGCTCGAGCCTGACCACCCTATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGCTACCGCGCCGAGGAAGTCCTCGGTCGCAACTGCCGATTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCTTTGGTGGACTCGACAGTTGTTTCAGAGATCAGAAGATGCCTTGATGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTAACACCTATATATGGAGATGATGAGATAACTCATATTATTGGAATCCAGTTCTTCACAGAGGCAAATATTGATCTTGGTCCCCTTCCGGGTTCTACAATTAAGGAATCTACTAAATCAACAGATAGGTTTCATTCTGTGCTTTCCTCATTGAATCCTCTACCAGTGGGGGACCGAAATGTTACTCGTGGAGTTTGTGGTATATTCCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCTAGAGATATTGCATCAGTTAGTTCTGTTTGTAGACGATTGTATGAGCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTTCCTGGTGCAAGGAGACTTGGATGGGGTCGGTTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCCTGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAACTTCAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTCGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTATTGGATCTCAATTCTAATAATCCAGAGTGGCAACATGTCCAGGTGAGTTCTCCGCCCCCTGGTCGGTGGGGCCACACAATTTCTTGTGTTAATGGTTCTCGTTTGGTTGTGTTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGACTGGCACCTCCACTTCCTAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGGGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCGATGGAAAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCGCGTCTGGGTCACACTCTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCAAAGAGTGGGCCACTGCGTTTTCGCTCTAGTGATGTATTCACTATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCTGGAGGCGTAGCTCCTCCACCTAGACTTGATCATGTGGCTGTCAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCTGGTCTTCATTCTGCCTCCCAGCTTTACATACTAGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTAGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCACGAACTTTCCTTAGCAAGTTCTGTCATATAA 1854 0.486 MEWDSNSDLSGDDDDAVSFLLNDDDDDDAAVGSLPFPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHIIGIQFFTEANIDLGPLPGSTIKESTKSTDRFHSVLSSLNPLPVGDRNVTRGVCGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTISCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03333 617 Gene3D PAS domain 39 165 - -
Pste2g03333 617 ProSiteProfiles PAS repeat profile. 40 115 IPR000014 -
Pste2g03333 617 Gene3D - 482 615 IPR015915 GO:0005515
Pste2g03333 617 FunFam Putative LOV domain-containing protein 278 482 - -
Pste2g03333 617 CDD PAS 44 151 IPR000014 -
Pste2g03333 617 CDD F-box_AtADO-like 204 250 - -
Pste2g03333 617 SUPERFAMILY F-box domain 197 266 IPR036047 GO:0005515
Pste2g03333 617 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 26 614 - -
Pste2g03333 617 Gene3D - 279 481 IPR015915 GO:0005515
Pste2g03333 617 ProSiteProfiles F-box domain profile. 216 249 IPR001810 GO:0005515
Pste2g03333 617 Pfam Kelch motif 458 509 IPR011498 GO:0005515
Pste2g03333 617 Pfam Kelch motif 525 572 IPR011498 GO:0005515
Pste2g03333 617 FunFam Adagio protein 1 202 249 - -
Pste2g03333 617 SUPERFAMILY Kelch motif 287 506 IPR015915 GO:0005515
Pste2g03333 617 Pfam F-box-like 213 251 IPR001810 GO:0005515
Pste2g03333 617 Pfam Galactose oxidase, central domain 363 412 - -
Pste2g03333 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 44 154 IPR035965 -
Pste2g03333 617 Pfam PAS domain 45 154 IPR000014 -
Pste2g03333 617 SUPERFAMILY Kelch motif 455 611 IPR015915 GO:0005515
Pste2g03333 617 NCBIfam PAS domain S-box protein 57 153 IPR000014 -
Pste2g03333 617 FunFam Adagio protein 1 37 165 - -
Pste2g03333 617 FunFam Putative LOV domain-containing protein 483 616 - -
Pste2g03333 617 Pfam Galactose oxidase, central domain 301 351 - -
Pste2g03333 617 Gene3D - 202 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03333 Pste-Chr2 33393163 33400231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03333 40 155 AGC Kinase Gene Family AT5G58140 34.188 4.20e-14 73.9