LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03331	GTGTAATTTTTTTGATATTCTGTGTTTTGATGTGGCTTCAGCCCAAATGCCCCCCAGGAATGCTTACTGCAGACTCACGATTTATGACACTCACTATGGATAAATTTCTGAATGATATGGAAAGGGAGAAGCCAATCAGGTTTACTGAGCAGCATCTAAAGATTGCAACTGATAACTACTCTTACTTGTTGGGAGCAGGAGGCTTTGGAGCAGTTTATAAGGGAGTTTTTAGTGATGGGACCATTGTAGCTGTGAAGGTTCTGCATGGGCGTTTAGGCAAGAAAGTTGAGGAGCAGTTTATGGCTGAAGTGGGGACAATTGGCAAAATTCATCACTTCAATCTGGTTCGGCTCTATGGATTTTGCTTTGAAAGAAACTTGATAGCACTGGTTTATGAATACATAGAGAATGGTTCTCTTGATAAGTATCTATTTAGTCAAAACAAGATCATAGGATTTGAAAGGCTCCATGAGATCGCAGTTGGGACAGGTAAGGGCATTGCTTATTTGCATGAAGAGTGTCAACAGAGAATAATACACTATGACATCAAACCAGGAAATATTCTCTTGGATGGAAACTTGAATCCTAAACTTGCTGATTTTGGTTTAGCCAAGCTTTGTAACAGGGAAAATACTCATTTAACCATGACTAGGGGTAGGGGGACTCCTGGTTATGCTGCACCTGAACTTTGGATGCCTAATTTTCCTGTGACTCGCAAGTGTGATGTTTATAGCTTTGGAATGCTGTTGTTTGAAATCATAGGCAGGAGAAGAAACATTGAGGTTGACCATGTTGTTGAAAGCCAGGAGTGGTTTCCAATGTGGGTTTGGAAAAAATTTGATGCTGGAGAATTTGAGGAGTTGATAGTAGCATGTGGGATAGAGGAGAAAAGTAGGGAGATAACAGAGAGAATGGTTAATGTAGCTCTTTCCTGTGTTCATTATAGGCCGGATTCAAGGCCTATAATGAGTGACGTGGTGAAAATGTTAGAAGGTTCAGTGGAAATTCCGAAACCTTTGAACCCATTTCTGCAATTTATGGATGGTAATTTCACTGCTAATCCAGTTCATGTGCCACCGAGCTACACTACAGATACTAGCAGTTCTTCTGCTGTGGTAACTGACTCTAGCATTGTACATGCTACTCCTACTATGGGGAACAAAGAATTAAGGTCCATAATGAGTGCTGTGGTGAAAATACTAGAAGGTTCAGTGGAAATTCCAGAACCTACGAACCTAATGCAGCACTTGATGGGTGGGATTTTCATTGCTCATCCAGTCCATGTGTCACAGACCTATAAAACAAGTATTTCGTCTGGTTACTCTGCTATGGTAACTGCCTCCAGCATAGTATATGCTACTCCTATGAGAAAATGTCATTCTTTTCAACGTTCATGTGAATCCCACATTACATCTCCTGTATCCACTGCTATATATTTGAATTCTTATGAAAGAATTAATGGAAAACACGAACCTTCAGGTAGCCGTACCCATCATAGCAGATCCCTGAGCAAGGCTGATGCCAGTTCAGACATGCGATATCCAAATCCTGGCGTGCATGAATTTCTAAGAAACATGGAAAAAGAAAAGCCAATTGGGTTTACTGCTGAGGAGCTCAGGATTGCAACTGATAACTACTCTACATTGTTGGGATCAGGGGGTTTTGGAGAAGTTTATAAAGGAAATTTAAGTGATGGAATCACTGTGGCTGTGAAGGTTCTACGTGGGAATTCTGATAAGAGAATTGAGGAACAATTTATGGCAGAAGTGGGTACAATTGGAAAAATTCATCATTTCAATCTAGTTCAGTTGTATGGGTTTTGCTTTGAAAGAGACCTAAGAGCACTGGTTTATGAGTACATGGGCAATGGATCTCTTGACAAGTATTTGTTCAATGATAACAAGACCTTAGGATATGAAAAGCGTTATGAGATAGCGGTTGGGACTGCCAGAGGCATTGCATACTTGCATGAAGATTGCAAACAAAGAATAATCCACTATGATATCAAACCAGGAAATATTCTATTGGACAGCAACTTCAATCCTAAGGTTTCTGATTTTGGATTGGCCAAGCTTTGTAACAGGGACAATACTCATATAACTATATCAGGAGGTAGGGGCACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCTTTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGAATGCTTTTATTTGAAATCATAGGCAGGAGAAGAAACCTTGACATTAACCTTCCAGAAAGTCAAGAGTGGTTTCCAATATGGGTTTGGAAAAGATTTGACGCTGGAGAATTGGGAGAATTAATAATGACTTGTAAGATAGAGGAGGGGTATATGGAAATGTCTGAAAGAATGGTTAAGGTTGCTTTGTCGTGCATTCAATATAGGCCAGAATCAAGACCAAAAATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTTGTAAACCTTTGAACCCATTTCATCATATGATGATGGATGGGACTTTAGCTGGTCATTCAGTCCAAGGATCACAGACTGATGCTACTATTAAACTTGTGACAATACTTGAATTCAAAGAGAAATATGGACGAATTATAATCCCTTTTTCTACAATGCAGAACCCACACTTGTATGGCATCAATCGTCCCACACATACAAAAAGCCATTTGCTAAGCATAAAAGAAATTAAATATGATACAAAACAGGTGCAAATATGGAGAAATGCTATCAGCAAATCTTCTAATTTCTCAGGAATAGATAGATCATCAAAAAGTCTAGTTGTGGTTGCAGTGAAGGTAAGTATTTTGATTTGTGTGTGCCGAAAAAGAAATGAGATTGATAGCAGATCAGTAAGGCCAGTTACAGAATTTCTTACAGTCACTATGAATAGATTTTTGAATGACATGGAAAGGGAGAAACCAATCCGGTTCACTGATCAGCAACTAAGGATTGCAACTGATAACTACTCTAACTTGTTGGGCTCAGGAGGCTTTGGAGCAGTGTATAAGGGAATTTTTAGTAATGGGACCATGGTAGCTGTAAAGGTTCTACGTGGGAGTTCAAATAAGAAAAAAGAGCAGCAGTTTATGGCAGAAGTGGGTACAATAGGTAGAATTCATCATATAAATCTTGTTCGGCTCTATGGATTTTGCTTTGAAAGAAACTTGATAGCATTGGTGTATGAGTATATGGAAAATGGTGCTCTTGATAGGTATTTGTTCCATGAAAAGAAGACCTTAGAATATGAAAAGCTTCATGAGATTGCAGTTGGGACAGCAAGAGGCATAGCTTATTTGCATGAAGAGTGCCAACAAAGAATAATCCATTATGACATAAAACCAGGAAACATTCTCTTGGATGGAAATTTCAATCCAAAGGTTGCTGATTTTGGTTTAGCCAAACTCTGCAACAGGGAAAACAGTCATATAACCCTAACAAGGGGTAGGGGTACTCCTGGTTATACTGCACCAGAGCTGTGGATGCCAAAATTTCCTATAACTCATAAGTGTGATGTTTATAGTTTTGGCATGCTATTATTTGAAATTATAGGCAGAAGAAGAAACTTTGATATCAAAGTTGCTGAAAGCCAAGAGTGGTTTCCAATGTGGGTTTCTAAAACTTTTGATACTGGACAACTGGAGGAGTTAATGGTAGTCTGTGAGATAGATGAGAAAAGAATGGAGATTGCAGAAAGAATGATTAAGATAGCATTGTGGTGTGTTCAGTACAAGCCAGAATCAAGGCCCATGATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTTGAAATTCCAGAACCTGAAAACCCATTTAAGCACTTGATGAGTGGGATTACAGTAGCCAGCTCATCTAGTCTAAGTTTCTACCATGTCACAAATTTTGACGTTGTGTTCCTGTCCTTGTTACTTTTATTGGCTTGGTGTTGTAAAAGATGCACGCCCAAGATTGAAAGAAGTTCAGACATGATTTTTATGGTGAACATATTTCTGAGTAATATGGAAAGAGAAAAACCAATCAGGTTTACTGGTGAGCAGCTCCGGATAGCTACTGATAATTACTCTACATCATTGGGTTCAGGAGGTTTTGGACAAGTTTATAAAGGAAAATTAAGTGATGGAACCACTTTGGCTGTGAAGGTTCTACGTGCAAATTCGGATAAGAGAATTGGTGAGCAGTTTATGGCAGAAGTAAGTACAATTGGGAAAATTCATCATTTCAATCTGGTTAAGTTGTATGGGTTTTGCTTTGAAGAAGACTTGCGAGCACTGGTTTATGAGTTCATGGCCAATGGCTCTCTTGACAAGTATCTGTTTCACGGAGACAAGTCCCTAGAATATGAAAAGCTTCATGAGATTGCAGTTGGGACAGCCAGAGGCATTGCATACTTACATGAAGGTTGCCAACAAAGAATAATCCACTATGACATCAAACCAGAAAATATTCTATTGGACAGCAACTTCAATCCTAAAGTTGCTGATTTTGGATTGGCCAAGCTTTGTAACAGAGACAATACTCATATAACTATGACAGGAGGTAGGGGCACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCTTTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGAATGCTGTTGTTTGAGATCATAGGCAGGAGAAGAAACCTAGAAATTAACCTTTCGGAAAGTCAAGAGTGGTTGCCAGTATGGGTTTGGAAAAGATTTGATGCTGGAGAATTGGCAGAGTTAATAATGACTTGTAACATAGAAGAGAGGCATAAGGAATTGGTTGAAAAAATGGTTAAGGTGGCTTTGTTGTGTGTGCAGTATAGGCGAGAATCAAGACCAATGATGAGTGATGTGGTAAAAATGTTGGAAGGTTCATTGGAAATTTCTAAACCTATGAACCCATTTCAGCATATGATGGATGGGGCTTTCCATGTTCATTCAATCCAAGCATCACGGACTGATGCTAATACAAAAAAAGAAGGGAAGAACTCCCCAACCGGAGAAATAGAACACACTCTGCAAAACTTCTCGGGAGAAGAAACCTTGACATTATCCTTCCTCAAAGCCATGAGTGGTTCTCGGTATGGGTTTGGAAGATATTTGATGTTGGAGAATTGGCTGAAGGAGATGCATAAGGAAATGGTTAAAAGAATGGTTAAGGTAGGTTTGTCATGTGTTCTGTATAAGCTAGAATCAAGGCCAATTATGAGCAATATGGGGCAAAGGGGAACTTCTGGTAATGCTGCACCTGAACTTCGCTTGCCATTTCCTCACAAATGTAATATTTACAACCTTGAAATACTACTATTTGAAATCATAGGCAGGAGA	5324	0.3941	MWLQPKCPPGMLTADSRFMTLTMDKFLNDMEREKPIRFTEQHLKIATDNYSYLLGAGGFGAVYKGVFSDGTIVAVKVLHGRLGKKVEEQFMAEVGTIGKIHHFNLVRLYGFCFERNLIALVYEYIENGSLDKYLFSQNKIIGFERLHEIAVGTGKGIAYLHEECQQRIIHYDIKPGNILLDGNLNPKLADFGLAKLCNRENTHLTMTRGRGTPGYAAPELWMPNFPVTRKCDVYSFGMLLFEIIGRRRNIEVDHVVESQEWFPMWVWKKFDAGEFEELIVACGIEEKSREITERMVNVALSCVHYRPDSRPIMSDVVKMLEGSVEIPKPLNPFLQFMDGNFTANPVHVPPSYTTDTSSSSAVVTDSSIVHATPTMGNKELRSIMSAVVKILEGSVEIPEPTNLMQHLMGGIFIAHPVHVSQTYKTSISSGYSAMVTASSIVYATPMRKCHSFQRSCESHITSPVSTAIYLNSYERINGKHEPSGSRTHHSRSLSKADASSDMRYPNPGVHEFLRNMEKEKPIGFTAEELRIATDNYSTLLGSGGFGEVYKGNLSDGITVAVKVLRGNSDKRIEEQFMAEVGTIGKIHHFNLVQLYGFCFERDLRALVYEYMGNGSLDKYLFNDNKTLGYEKRYEIAVGTARGIAYLHEDCKQRIIHYDIKPGNILLDSNFNPKVSDFGLAKLCNRDNTHITISGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDINLPESQEWFPIWVWKRFDAGELGELIMTCKIEEGYMEMSERMVKVALSCIQYRPESRPKMSDVVKMLEGSVEICKPLNPFHHMMMDGTLAGHSVQGSQTDATIKLVTILEFKEKYGRIIIPFSTMQNPHLYGINRPTHTKSHLLSIKEIKYDTKQVQIWRNAISKSSNFSGIDRSSKSLVVVAVKVSILICVCRKRNEIDSRSVRPVTEFLTVTMNRFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGAVYKGIFSNGTMVAVKVLRGSSNKKKEQQFMAEVGTIGRIHHINLVRLYGFCFERNLIALVYEYMENGALDRYLFHEKKTLEYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDGNFNPKVADFGLAKLCNRENSHITLTRGRGTPGYTAPELWMPKFPITHKCDVYSFGMLLFEIIGRRRNFDIKVAESQEWFPMWVSKTFDTGQLEELMVVCEIDEKRMEIAERMIKIALWCVQYKPESRPMMSVVVKMLEGSVEIPEPENPFKHLMSGITVASSSSLSFYHVTNFDVVFLSLLLLLAWCCKRCTPKIERSSDMIFMVNIFLSNMEREKPIRFTGEQLRIATDNYSTSLGSGGFGQVYKGKLSDGTTLAVKVLRANSDKRIGEQFMAEVSTIGKIHHFNLVKLYGFCFEEDLRALVYEFMANGSLDKYLFHGDKSLEYEKLHEIAVGTARGIAYLHEGCQQRIIHYDIKPENILLDSNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLEINLSESQEWLPVWVWKRFDAGELAELIMTCNIEERHKELVEKMVKVALLCVQYRRESRPMMSDVVKMLEGSLEISKPMNPFQHMMDGAFHVHSIQASRTDANTKKEGKNSPTGEIEHTLQNFSGEETLTLSFLKAMSGSRYGFGRYLMLENWLKEMHKEMVKRMVKVGLSCVLYKLESRPIMSNMGQRGTSGNAAPELRLPFPHKCNIYNLEILLFEIIGRR	1765

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste2g03331	1765	ProSiteProfiles	Protein kinase domain profile.	48	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	FunFam	Putative receptor-like protein kinase	1418	1619	-	-
Pste2g03331	1765	SMART	serkin_6	48	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	SMART	serkin_6	534	804	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	SMART	serkin_6	1341	1611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	SMART	serkin_6	977	1248	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	ProSitePatterns	Protein kinases ATP-binding region signature.	54	76	IPR017441	GO:0005524
Pste2g03331	1765	FunFam	serine/threonine-protein kinase PBS1-like	950	1053	-	-
Pste2g03331	1765	FunFam	serine/threonine-protein kinase PBS1-like	1318	1417	-	-
Pste2g03331	1765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1097	1109	IPR008271	GO:0004672\|GO:0006468
Pste2g03331	1765	SUPERFAMILY	Protein kinase-like (PK-like)	31	321	IPR011009	-
Pste2g03331	1765	PANTHER	OS07G0415500 PROTEIN	916	1261	-	-
Pste2g03331	1765	MobiDBLite	consensus disorder prediction	479	496	-	-
Pste2g03331	1765	ProSitePatterns	Protein kinases ATP-binding region signature.	540	562	IPR017441	GO:0005524
Pste2g03331	1765	FunFam	serine/threonine-protein kinase PBS1-like	20	124	-	-
Pste2g03331	1765	Pfam	Protein tyrosine and serine/threonine kinase	538	804	IPR001245	GO:0004672\|GO:0006468
Pste2g03331	1765	Pfam	Protein tyrosine and serine/threonine kinase	1344	1611	IPR001245	GO:0004672\|GO:0006468
Pste2g03331	1765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1461	1473	IPR008271	GO:0004672\|GO:0006468
Pste2g03331	1765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	654	666	IPR008271	GO:0004672\|GO:0006468
Pste2g03331	1765	SUPERFAMILY	Protein kinase-like (PK-like)	518	805	IPR011009	-
Pste2g03331	1765	ProSitePatterns	Protein kinases ATP-binding region signature.	1347	1369	IPR017441	GO:0005524
Pste2g03331	1765	CDD	STKc_IRAK	540	806	-	-
Pste2g03331	1765	CDD	STKc_IRAK	1347	1613	-	-
Pste2g03331	1765	FunFam	serine/threonine-protein kinase PBS1-like	508	610	-	-
Pste2g03331	1765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
Pste2g03331	1765	FunFam	Putative receptor-like protein kinase	1054	1256	-	-
Pste2g03331	1765	ProSiteProfiles	Protein kinase domain profile.	534	818	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	MobiDBLite	consensus disorder prediction	478	503	-	-
Pste2g03331	1765	Gene3D	Phosphorylase Kinase; domain 1	23	124	-	-
Pste2g03331	1765	Gene3D	Phosphorylase Kinase; domain 1	1319	1417	-	-
Pste2g03331	1765	Gene3D	Phosphorylase Kinase; domain 1	510	610	-	-
Pste2g03331	1765	Gene3D	Phosphorylase Kinase; domain 1	951	1053	-	-
Pste2g03331	1765	SUPERFAMILY	Protein kinase-like (PK-like)	1322	1612	IPR011009	-
Pste2g03331	1765	FunFam	Putative receptor-like protein kinase	125	328	-	-
Pste2g03331	1765	FunFam	Putative receptor-like protein kinase	611	812	-	-
Pste2g03331	1765	ProSitePatterns	Protein kinases ATP-binding region signature.	983	1005	IPR017441	GO:0005524
Pste2g03331	1765	ProSiteProfiles	Protein kinase domain profile.	977	1262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	Gene3D	Transferase(Phosphotransferase) domain 1	1418	1627	-	-
Pste2g03331	1765	Gene3D	Transferase(Phosphotransferase) domain 1	1054	1259	-	-
Pste2g03331	1765	Gene3D	Transferase(Phosphotransferase) domain 1	611	812	-	-
Pste2g03331	1765	Gene3D	Transferase(Phosphotransferase) domain 1	125	328	-	-
Pste2g03331	1765	SUPERFAMILY	Protein kinase-like (PK-like)	960	1249	IPR011009	-
Pste2g03331	1765	Pfam	Protein kinase domain	981	1245	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	Pfam	Protein kinase domain	53	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03331	1765	ProSiteProfiles	Protein kinase domain profile.	1341	1625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03331	Pste-Chr2	33353773	33386668	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03331	524	820	Receptor kinase-like Gene Family	AT5G39030	45.574	6.53e-70	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-Os	Pste2g03331		PK_Tyr_Ser-Thr	3.1e-48	CL0016