LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03326	ATGTGGGGGAATTTGGTTGGGAAAGGAGGGTATGCAGAGGTTTATAAGGGAACATTGAATGGTGGCGAGGAAGTTGCAGTGAAGAGGCTCACGAGAACTTCAAGGGATGAGAGGAAGGAGAAGGAGTTTCTGGTTGAGATTGGCACAATTGGTCACGTGCGCCATTCCAACGTGTTGCCTCTTCTGGGGTGCTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTTGGTTCTGTTGCTTCTCTTATTCATGATGAGAAATTGCCTCCATTGGAATGGAAAACAAGGTATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCAGGAGGAGGATCATTCATAGGGACATCAAGGCATCAAACATTTTGCTAACTGCAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCATTCAATAGCCCCTATAGAAGGAACATTTGGCCATTTGGCACCAGAGTACTACATGCATGGAGTTGTGGATGAGAAGACTGATGTATTTGCCTTTGGTGTGTTCCTGCTTGAAGTCATATCTGGAAGGAAACCAGTGGATGGCTCTCACCAAAGCTTGCACAGCTGGGCTAAACCAATACTCAACAAAGGGGAGATAGAAAAACTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGATTAGCTTTTGCTGCATCCCTTTGCATACGGGCATCTGCAACTTGGCGACCTACCATGAGTGAGGTACTAGAAGTAATGGAGGAGTGGGAGATGGATAAAGAGAAGTGGGAAATGCCAGAGGAAGAAGAGCAAGAGGAGGAATTCTGGAGTTTTGAGGATCTGGAATATGCATGACAGTTCTTTTTCAATGTCTACTTGAGTCTGTTGGAAGTACTTAGGTTAAAGGTGTTATTAGGTACTACTTTCAACTCTGTATATATATGCATATTGTTACATTGATAAAAAAGGTGCAGATAAGCCTCTTGTGCCTGTTCTGTTCTGTCCTGTGTAATCAATCTATATAACGTAGTGTTTCCTTTTA	1084	0.4373	MWGNLVGKGGYAEVYKGTLNGGEEVAVKRLTRTSRDERKEKEFLVEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKLPPLEWKTRYKIALGTARGLHYLHKGCRRRIIHRDIKASNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEKLVDPRLGGAYDVTQFNRLAFAASLCIRASATWRPTMSEVLEVMEEWEMDKEKWEMPEEEEQEEEFWSFEDLEYA	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03326	298	MobiDBLite	consensus disorder prediction	277	298	-	-
	Pste2g03326	298	ProSiteProfiles	Protein kinase domain profile.	1	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g03326	298	PANTHER	OS08G0249100 PROTEIN	4	293	IPR046958	-
	Pste2g03326	298	ProSitePatterns	Protein kinases ATP-binding region signature.	6	28	IPR017441	GO:0005524
	Pste2g03326	298	SUPERFAMILY	Protein kinase-like (PK-like)	3	271	IPR011009	-
	Pste2g03326	298	CDD	STKc_IRAK	6	269	-	-
	Pste2g03326	298	Pfam	Protein tyrosine and serine/threonine kinase	4	208	IPR001245	GO:0004672\|GO:0006468
	Pste2g03326	298	FunFam	Putative receptor-like serine/threonine-protein kinase	78	291	-	-
	Pste2g03326	298	SMART	serkin_6	3	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g03326	298	Gene3D	Phosphorylase Kinase; domain 1	2	76	-	-
	Pste2g03326	298	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	121	133	IPR008271	GO:0004672\|GO:0006468
	Pste2g03326	298	Gene3D	Transferase(Phosphotransferase) domain 1	78	295	-	-
	Pste2g03326	298	PIRSF	ILK	3	286	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03326	Pste-Chr2	33310572	33314987	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03326	5	268	Receptor kinase-like Gene Family	AT5G56890	43.223	1.24e-65	220

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Pste2g03326		PK_Tyr_Ser-Thr	1.4e-41	CL0016