Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03290 TGACAGGCATATATATGTTAGTATGATTTACGGTGCGACCTTTTTCTAGGGCTAGAAGAGTGTAAACTCATCATCTTCCAAATCCCCCTTTCAGCTCTCAACCTTTTTACCAATCGTAGAGGGGCGGCGATGGCGACAACCTCGGTGGTGCCGGCGAACAGACGCCGGGCACCGAACGCGGCGGAGGACATGGACTTCGAGACGACGGAGGGAGTGAAGGCCATCGCGAGCTTCGAGGAGATGGGGATTAAGGACGATCTACTCCGAGGAATCTACCAGTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAACGGGCCGTCACGCCCATCATCCAGGGCCGTGACGTCATCGCCCAGGCCCAATCTGGAACCGGCAAAACGTCCATGATTGCTCTCACCGTTTGCCAGGTTGTCGACACCTCCGTCAGAGAGGTTCAGGCGTTAATATTGTCACCAACGAGGGAACTGGCCTCGCAGACTGAGAAAGTTATATTGGCTATTGGGGATTTCATTAATATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGAGAGGATATTAGGAAACTTGAGTATGGAGTTCATGTTGTGTCTGGAACTCCTGGCCGGGTCTGTGACATGATCAAAAGGAGAACATTGCGCACAAGGGCTATCAAAATGCTAGTACTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTCTATAGATATCTCCCACCCGATCTTCAGGTTGTCTTGATTTCTGCTACTCTTCCTCATGAAATACTGGAGATGACAAACAAGTTCATGACAGATCCTGTAAGGATTCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAACAATTTTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGACACCCTGTGTGATCTTTATGATACTCTAACCATCACTCAAGCTGTTATATTTTGCAACACCAAGCGAAAGGTGGACTGGTTGACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCCATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTACTAATCACAACTGATGTTTGGGCACGTGGTCTTGATGTACAGCAGGCAAGTTGTTGCACTGGTCTTTCTGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGAGAACTTTACATTCATCGAATTGGCCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCGATAAATTTTGTGAAGAGTGATGACATCAAGATCTTGAGAGATATTGAACAATACTACAGTACTCAGATTGATGAAATGCCTATGAATGTTGCTGATCTTATATAAAATGTCACGTGGTATGCTGGGTGGAGTGGGTTTGTCATATCTTGCGGTAGGGAGTAGTTTTTGAATGTGATTTCTTGCTCTGGAATACATTGGTGATGCTCTTGTAAGCTTCTGACATTTGGTTAAAATTAGAATTTTCACAGTAGAGTGATTGACTGTATTAAAGGTAGTATTTTTCTTTGCTGATGAGGTTGAGAATTGAGATTAATGTGTAAATTGTGTTGAGTGGATTTATCCAATGTATCACTCTTGATATTGAATTTGTAATTTTATGCTTCGAAATGACAGTTGATATTCTGATTTGGTTTTTGATTACTTGGC 1695 0.4313 MATTSVVPANRRRAPNAAEDMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQASCCTGLSVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03290 414 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Pste2g03290 414 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Pste2g03290 414 SMART helicmild6 286 375 IPR001650 -
Pste2g03290 414 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 397 - -
Pste2g03290 414 Gene3D - 238 414 IPR027417 -
Pste2g03290 414 Pfam Helicase conserved C-terminal domain 259 375 IPR001650 -
Pste2g03290 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 397 IPR027417 -
Pste2g03290 414 FunFam Eukaryotic initiation factor 4A-III 16 237 - -
Pste2g03290 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 414 IPR001650 -
Pste2g03290 414 SMART ultradead3 52 249 IPR014001 -
Pste2g03290 414 FunFam Eukaryotic initiation factor 4A-III 240 414 - -
Pste2g03290 414 Gene3D - 17 237 IPR027417 -
Pste2g03290 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Pste2g03290 414 CDD SF2_C_DEAD 246 384 - -
Pste2g03290 414 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03290 Pste-Chr2 32803038 32806609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03290 23 414 Eukaryotic Initiation Factors Gene Family AT3G19760 87.500 0.0 717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03290 2 32803038 32806609 Pste2g03290 2 32803038 32806609 ECH