Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03233 GTTGTTGAAGTCGGTTCTTCTGCCCCGTTTGGTTGTGTCTTGAGGGACCGCAATCACCGGGAAGCAGCAACCAAAGAAACCAATGTGAAGGGCACTCATCACCATCATGCTACTTTCCAAAGGAACATTAACGACTTTGTCATGGACCTCAACACGTGCATGCGTGTGCCTTCTGATTCCACAACAACAAGTGAAAACAAGAGCAACAACAACAACAACGATCTTAACGAGCGTAAGGCTCCAAAAAATATCCGCCTTGAGAGGATTCGTTGTTTTTCAAGAACTACTTCATTTGTCCACAGCAACAACCACGTTAGCAACAATGCAAGCTCGCTGGCCTCGTTGGTGAGCCCGCGACACTCGAGGCTGCTGGATCGTTGGGCTGCGAGGCAGGCTCGTGAGATGGTATCAAATTTGGAGAATGAGGCTGAGTTGTTGTCTATGGATGACAATGACATGCTTCCAAGGACTTCTACTTCCTCCTCCTCCGAGGAATCTTCCTCGGAGTTACGAAATCTAGGTGCCTCTTCTCTTGTTCAGATGTGGGAGAAGAGGCTTAACAAACCGGGCTCCAGAGGAAACATCCAAATGGAGAAGTTCGGTTCTTCCTCTTCTCCCACAAATGAGAATGCATTAACTTTCTCCGGAGAGGAGCATTGCTTCTATGGACCCTCTGGGAATGAAGAAGGTCACTCTTTTCCTTCTTCCTTCCCTGATTGGGAATCTAGTGACCACTCTGTTTCTCCACATGCCAGGTCCGAGAGTGGTGTCAGTGTTGCTGACATCATAAAGAAACTCACTTCTACCAACCAGAATCAAAGTCCAACACCTTCTCTTGCTGATGACAATGAACATGAAGGCTATGGTAGTAGTGTGACAAGGTCTCCTAGTAGAGAACGTGAATCTTGTAAACAACTCCATTCTTCAGAGCAGACCCAGAGAGTTACTCGTTCCCTGCGAATTAGAGGGCGCCGAGCATACATTGATTTGCTTATGCAGATTGAAAATGACAGGCTTCGGGAGCTTAACAACTTGGCTGATCGTGGAGCAGTTTCCAGATTTGCACAGAAAGGCCGCATTCAGGCATTGCTTCGACTTAAACTATTGCAACGTGGAGTGGCAGCCAATGATCCTTCCCGCCAAAAATCATTAACATCTGAATTAAATAACAGGCAGCCACAGGGATCATCAGCAATTATGCAATTAAGGGAAAGATTTAGCAGTGGGGCTGTACTTAGAACTCCTGTCCAAACAGAAGTAACTAGCCAAAGAGATTCTCAAAGGGAGACAGTAAACAAAACCACGCAATTGGATAACTCTGCCACCACTAGTCAACTTAGCAAAGAAACAAGCAACCAGAAAGGTCATAGCACTGCTAATCAGGCCAAAGAATCCACACAAAAGTCAGTGTCACAGACTAGAATAGATCATAATACAGAAGAAGCTCGTCCAAGCTCAGATGCCATGGTCCAAGAAAAACATCCAAGTTCAGATGTCAAGGATCTCCACTATGATTCACAAGAAACTACTGAGGCAACTACCTCTATGGTGGATTCAAATATAAATGAGAGAGTAGATAGGATAGAGCCAAGCAACCAACAGAATGCTATGGCTAAAAGCAGTAATGATGAGATAGTCACTGAGGAGGCAAGTAACCAGCAGTATGCTGAAACCAGTTATGAGGAGACAGTAGAAGAAGAGGCGAGTAATCAGAACTATGCTGAAAGCAGTTATGATGATGAGACAGAGGAAGAGGTAGAGGATATTGACCAGAATGGTGTTGAAACTAATTATGATTGGATCAGTGAAATTTCTAGGCCGAGGAGCTATTGGGAAGAGCTCAGGCAAGCATGGTATAGAGAGATGCTTGAAAATGATTCACAAAATGAAGATATAAGGAGGCTTCTTCAAAGGGGAACACAAACACGTTTAGTAAATAGTCAAGACCGTGAACCAGACAGCCAAGGGCTGATGACACTTTTACAAGAACGTTTTCATTCTGCAAGAACTTCTCAAGAAGATGGAAGAGATGCAAGGGAGAAAGAGGAGGAGCAGAGGAGAAATCATGATGACGAAGAGGAAGAAGAGGAGGATAATGTAGATGAGCATGAAGAGCACGAGGGAGAGAGCTTGGTAAGTGGTTCATATCATGAAGCCGGTGGTTATTCTAATCGATCATCATCGTGGAGTTACAGGGACAATGAAGGTGGTGATGATTTTGATAGAGTTGTTTCTACATCCCCACAACCTTATCAATCTCCATCTTTCTATCAGGATAGTCGCCACTCTCCATCCACCAATCATCATTCAATGGAATTGGAACTCATATATGATTTGAGAGGGCAGATGGAGCAACTTTATCATGAGATATCTGAGCTAAGGAAATCAATAAAGGGCTGCATGGATATGCAGATAGAATTAAAAAAATCCATGAAACAAGAAGTTAAACCAGTTAAAAAAGAAGAAAAGAAGTCCAATAACAAGACTCTGAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTAGACTCCGTTTTGTACAGGTGTGGACACATGTGTGCATGTATCAAGTGTGCCAACGAGTTGCAATGGAACGGTGGAAAATGCCCCATATGTCGTGCTAAAATAGTGGATGTTGTCCGAGTATATGTTGAC 2658 0.4383 VVEVGSSAPFGCVLRDRNHREAATKETNVKGTHHHHATFQRNINDFVMDLNTCMRVPSDSTTTSENKSNNNNNDLNERKAPKNIRLERIRCFSRTTSFVHSNNHVSNNASSLASLVSPRHSRLLDRWAARQAREMVSNLENEAELLSMDDNDMLPRTSTSSSSEESSSELRNLGASSLVQMWEKRLNKPGSRGNIQMEKFGSSSSPTNENALTFSGEEHCFYGPSGNEEGHSFPSSFPDWESSDHSVSPHARSESGVSVADIIKKLTSTNQNQSPTPSLADDNEHEGYGSSVTRSPSRERESCKQLHSSEQTQRVTRSLRIRGRRAYIDLLMQIENDRLRELNNLADRGAVSRFAQKGRIQALLRLKLLQRGVAANDPSRQKSLTSELNNRQPQGSSAIMQLRERFSSGAVLRTPVQTEVTSQRDSQRETVNKTTQLDNSATTSQLSKETSNQKGHSTANQAKESTQKSVSQTRIDHNTEEARPSSDAMVQEKHPSSDVKDLHYDSQETTEATTSMVDSNINERVDRIEPSNQQNAMAKSSNDEIVTEEASNQQYAETSYEETVEEEASNQNYAESSYDDETEEEVEDIDQNGVETNYDWISEISRPRSYWEELRQAWYREMLENDSQNEDIRRLLQRGTQTRLVNSQDREPDSQGLMTLLQERFHSARTSQEDGRDAREKEEEQRRNHDDEEEEEEDNVDEHEEHEGESLVSGSYHEAGGYSNRSSSWSYRDNEGGDDFDRVVSTSPQPYQSPSFYQDSRHSPSTNHHSMELELIYDLRGQMEQLYHEISELRKSIKGCMDMQIELKKSMKQEVKPVKKEEKKSNNKTLKKGNCCICYEMKVDSVLYRCGHMCACIKCANELQWNGGKCPICRAKIVDVVRVYVD 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03233 886 CDD mRING-HC-C3HC5_NEU1 832 884 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 717 731 - -
Pste2g03233 886 SUPERFAMILY RING/U-box 834 879 - -
Pste2g03233 886 Coils Coil 675 706 - -
Pste2g03233 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 886 IPR013083 -
Pste2g03233 886 MobiDBLite consensus disorder prediction 187 315 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 196 214 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 56 81 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 152 171 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 229 253 - -
Pste2g03233 886 Pfam Zinc finger, C3HC4 type (RING finger) 832 879 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 146 171 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 689 704 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 667 688 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 375 397 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 262 280 - -
Pste2g03233 886 ProSiteProfiles Zinc finger RING-type profile. 835 874 IPR001841 -
Pste2g03233 886 Coils Coil 129 149 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 508 576 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 745 764 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 474 507 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 577 592 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 665 767 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 376 397 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 411 473 - -
Pste2g03233 886 PANTHER BNAC05G24000D PROTEIN 2 886 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 409 592 - -
Pste2g03233 886 MobiDBLite consensus disorder prediction 56 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03233 Pste-Chr2 32175566 32180140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03233 835 883 C3H Transcription Factor Family AT3G06140 38.776 3.73e-06 48.1