Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03230 CGAAGACGCGTCGTCGTCCGTTTCAAAATTACTCAGATATTTAATCAAAATTACTCAGCTATTGCCTTTCAGTTTTCAACTCAGAGTTCACCACCACAACCTCCCCTTTCAACTTGCAAATTTTTATTTTTATTTTTTCCGTCATCATTTCTCGGCGGACAACTGAGTTGAGTGTTTTGACTTCTGATAGCTTTGTGAGGGTTTAGTTTTAGTAGGCATTTGGGTACTCAAATATTGTCAAAAATATTTTGGATCTTTGGTGGAAATTTTAAAACCCTAATTTTGTTCTTCTGCTGCGCTTCATTGTTGTTTCCGTATTTCCTTTTTCTTTATGGGGACTGAGGATGGAACATGCGATGCTGATAAGACGGAATGTGATGAACGAGTTCAGTGTTTGAAAGGCGCGACCTTGAATAGTGGGGTGGCAATTGCGGATGGGAATTGTGTTTCTGAAGAGGGTCAGCACTTGAAAATTGAAGCCGTGAATAATGGGGTGGCAATTGCTGATGGAGATGGTGTTGCTGAAGAGGGTAGGGTATTGAAAAGTGAACCCATGAATAATAGGGTGGCAATTGCTGATGGAAATGGTGTTGGTGGAGAGGGTAGGGTCTTGAAAAGTGAACCCTTATGTAATGGGGTGGCTGTTGCAGATAAAGGGGACTCTGGCAGAGTTGATTGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAAAAGGAAAAGTTCAGGAACAATGCAGAGAAATCGTTGAAACTGCAAGTCATATACCAGATCAGGATGTGAAGAAACCTTGTCATGTAGCTTTAGGCAATACTTCAGAAGATTGTTCCCATGAACAGTGGCGAAATATTGTACTAAAGCAATTATATCAGTCATTAGGTGAAGACAATGGTGGCATAGAGGGGTGCATAAGAGAAGCATTTATTCATCATCCTAAACTTAATCGTGCCAGTACAGTTATGGAAACTTCTAAAATTGACAAAGGACAAGAATGCTCTTTGCAATTTGATCAGCTTCCTCATAAAATAGGGAAGGGAGCTAATGGGCATACAGGTGTCATGTGTAATGGATATTCTAGAGAATCACCTGGCCATGGTGTCACTGAGATGTGTCAGCGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTCAGTTCATTATGTAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGATAGTGTATTTGACTTCACTGTCATGAACTCAAGGATGAAGGAGAAAGCTTATGAACAATCACCAACACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAATGAGATTGTTGCTCTAGCCAAGAGCCTCTCCAACATGTCAAGAACTTCTTACTCTGAGCTGGTGGGAATTTCAGCCCTGAATACATTGCAAGATGAGAAGCAAGTGCTCTACAACCGGGAATTTGACTCTCACATGCAACCAGGACAAATACAAGAATGTGCTATGTACAAAATTTGCAGTTGCAGGTGTTGTGGAGAGGAGGTAGCTGACACAGACTGTTTGGTTTGTGATTCATGTGAAGAGATATACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATAATTCCCCACAAAAGCTGGTATTGTTCCAATTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTGCTATGTGAAAGGTTAAATGGTACAAAAACACCAAATGGTGTAATTGGTGATGAAAGCTTTCCTACAATCGAGGAAACAAAAAATGATTTTGAAGACAACTCAAATTGCATCTCTAATGCAGTTGTGGTTTCCATAGATGAAAGAAAAACACTCAATTGCAAAGTATGTGGAAATGAAATGGATGGTGGAAAAATAAAAATATGTGGCCATCAGTTTTGCTCCAATAAATATTACCATGTAAGGTGTTTAACAAATAAGCAGTTAAAGTCATATGGTCACTGTTGGTATTGCCCTTCTTGTTTATGCCGTGTTTGCTTAAACGATCAAGATGACGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAATCCTGCGCAGACTTCTATTCCTAGTGGGAAATGGTTCTGCAGAACATGTGATGCTGGAATACAGGCAATCCATCAGGCTAAAAAGGCATACGAGAGTAACAAGCAAAGAAGAAATGAGGAAGATGCTAAAAAGCCAAATGCTGATCTTGAAAAGAAACACAACAATAAACGTATGAGAGAGTTGGAAAGAGGAGGAGCAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAGGAGAAAGAAGGCAATCCTCATTGAGTCAGACTGTCAGAGAACATGAATTGTGCTGGAGGGCTTTGTGAACCTTCCAGTTATTTTTAGTAATGACTTCAACTTCATATTTGTTGACTGTTAACAACATTATTTTACATTTGCTGCATTTTTTGAATGACTGATATTTTTGGTAGGCTGTAAAACTATCGTAGATTTCCTGGCTTTTGGATACACATGGAAAGACATGACTATAGAGGCTAAAGAGCAAAAGGCATAATCTGAATCTGCTCTAAGTGCCATCTGTGAGAGTAAGCAGGTCAGACATTGTAGCATATAGACTATAGACGTGGTTGATAAGAAACTTAATTGGCTGCTCTGCTTGTTTCATTCAGAATATTGTATTTGGGGTCGGAATGTTGTAAGCCAATATGTCTCTATAGTATTATAATCAATTTCTATTACTTTGAAAATTAGAGGAATGGAGATTTTTCTTTTTCCCATGGTTTATAATTCAACATTTCGTTACCATTTCTGTATGAAGCGTGTTCTGGATTGATGCACT 2852 0.3896 MGTEDGTCDADKTECDERVQCLKGATLNSGVAIADGNCVSEEGQHLKIEAVNNGVAIADGDGVAEEGRVLKSEPMNNRVAIADGNGVGGEGRVLKSEPLCNGVAVADKGDSGRVDCLRTYKRRKKSSSKGKVQEQCREIVETASHIPDQDVKKPCHVALGNTSEDCSHEQWRNIVLKQLYQSLGEDNGGIEGCIREAFIHHPKLNRASTVMETSKIDKGQECSLQFDQLPHKIGKGANGHTGVMCNGYSRESPGHGVTEMCQRVLCNILTSEKFSSLCKALLENFQGMKPDSVFDFTVMNSRMKEKAYEQSPTLFLSDIQQVWRKLQDTGNEIVALAKSLSNMSRTSYSELVGISALNTLQDEKQVLYNREFDSHMQPGQIQECAMYKICSCRCCGEEVADTDCLVCDSCEEIYHLSCIEPAVKEIIPHKSWYCSNCTANGIGSPHENCVLCERLNGTKTPNGVIGDESFPTIEETKNDFEDNSNCISNAVVVSIDERKTLNCKVCGNEMDGGKIKICGHQFCSNKYYHVRCLTNKQLKSYGHCWYCPSCLCRVCLNDQDDDKIVLCDGCDHAYHIYCMNPAQTSIPSGKWFCRTCDAGIQAIHQAKKAYESNKQRRNEEDAKKPNADLEKKHNNKRMRELERGGAMDMLLTAANTLNFEEKEGNPH 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03230 667 SMART PHD_3 502 551 IPR001965 -
Pste2g03230 667 SMART PHD_3 391 438 IPR001965 -
Pste2g03230 667 SMART PHD_3 552 597 IPR001965 -
Pste2g03230 667 Pfam PHD-finger 392 439 IPR019787 -
Pste2g03230 667 Pfam PHD-finger 552 597 IPR019787 -
Pste2g03230 667 Gene3D - 283 440 - -
Pste2g03230 667 SUPERFAMILY FYVE/PHD zinc finger 551 600 IPR011011 -
Pste2g03230 667 MobiDBLite consensus disorder prediction 609 637 - -
Pste2g03230 667 ProSiteProfiles Zinc finger PHD-type profile. 549 599 IPR019787 -
Pste2g03230 667 ProSiteProfiles Zinc finger PHD-type profile. 389 440 IPR019787 -
Pste2g03230 667 ProSiteProfiles Zinc finger RING-type profile. 552 597 IPR001841 -
Pste2g03230 667 PANTHER OS02G0192300 PROTEIN 302 439 - -
Pste2g03230 667 SUPERFAMILY FYVE/PHD zinc finger 389 438 IPR011011 -
Pste2g03230 667 FunFam PHD finger protein EHD3 isoform A 279 441 - -
Pste2g03230 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 603 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03230 Pste-Chr2 32164078 32171373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03230 551 617 C2H2 Transcription Factor Family AT3G01460 40.299 1.97e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste2g03230 PHD 3.6e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03230 2 32164078 32171373 Pste2g03230 2 32164078 32171373 ECH
Pste8g01996 8 15849288 15862458 Pste2g03230 2 32164078 32171373 PCT