Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03209 AAAGAAAGTAAAGAAAAGGAGAAGGGAAAGAAGAGAAAGGTTGTGAGTTGTGAGAGATGGGGAGGGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGGATTCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCCCAAGTTTCCCTCATCATCTTTGGTGCTTCTGGGAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGATGTCCTAGACAGATACCAAAGAGCCTCCGGAAAAACGCTCTGGGACGCTAAGCATGAGAACCTCAGCAATGAAATCGATAGACTGAAGAAAGAGAATGACAGCATGCAGATTGAGCTGAGGCACTTGAAAGGGGAGGATATTACGTCACTGAATTACAAGGAACTGATGGCCCTAGAGGATGCCCTTGAAAATGGCCTCAATGGCATCCTGCATAGGATGTTGAAGAGAAATGGCAAGATATTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGGTACGTGCCAATCTGTGTATATATGCATTACTGTGTCTGCAACTTGTTATCTTCTACCATTCATGTTTTTTAATAGGGATCCATATACATTGTTGTTCCACACATGCAACAACATTTAGCACTAGAAGGTGTGGGAAATATGCATGGACAATGGATTTGACGACATCAGTTGGGGGATTCATTTCGTATATGGAACATGCGGCTCGCCCTAAACAGCCAAATCTAAAGGAAAGAATATAGATTAAATCTGCTGGTGTTGTCAAATTAGTTCTGCTCAAAGCCTTATAGCTTATATGAACTTCTATCGTTTCTGATTTCGGCCCTATTTTTAAAGCTCAGTCAAGGCTTTAAAACTTGTTATACGATTATTTAATTTGGATCATGAAACTATCAATTAATGTTTACGCTTCTATCTTGAGTTTTCA 950 0.4021 KESKEKEKGKKRKVVSCERWGGIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGILHRMLKRNGKILEEQNKELNFLLVRANLCIYALLCLQLVIFYHSCFLIGIHIHCCSTHATTFSTRRCGKYAWTMDLTTSVGGFISYMEHAARPKQPNLKERI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03209 254 Coils Coil 94 128 - -
Pste2g03209 254 SMART madsneu2 21 77 IPR002100 GO:0003677|GO:0046983
Pste2g03209 254 Pfam K-box region 99 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g03209 254 SUPERFAMILY SRF-like 23 113 IPR036879 GO:0003677|GO:0046983
Pste2g03209 254 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Pste2g03209 254 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Pste2g03209 254 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Pste2g03209 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 169 - -
Pste2g03209 254 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Pste2g03209 254 ProSiteProfiles K-box domain profile. 101 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g03209 254 Gene3D - 30 117 IPR036879 GO:0003677|GO:0046983
Pste2g03209 254 ProSiteProfiles MADS-box domain profile. 21 78 IPR002100 GO:0003677|GO:0046983
Pste2g03209 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03209 Pste-Chr2 31948306 31951404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03209 21 152 MADS-box Gene Family AT5G20240 69.697 2.52e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste2g03209 K-box 2.6e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03209 2 31948306 31951404 Pste2g03209 2 31948306 31951404 ECH
Pste8g01986 8 15666139 15670626 Pste2g03209 2 31948306 31951404 PCT