Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03120 TGTGAAACAAAAGCCACTGCAAAACGCATCGAAAGAAGCGAGACCTAGTAGTCCTATTACATTTCTCTCTCTGTCTGTGATTTCTTCCTCTTTTTTCTATTTCCGTTTTATTTTTTCCGTGGCCAAATTCTCTTCTTCTATTTCACTGTTCTCTACGCGCAACCGTCACGGAGCAACCCTAGAAACCGCTTCCATCTCTGCGCCTCAACCACCCTCTGCGACCAAAACGTCGCCGTTTTGCTCTTCCATTGCAAAACTACGAAACACCAATAAAAGTTTCGACTTGCACTCCTACCCATACTTGCTCTTCGTGTTCAATTCCCAACCCTAGTTCTGAACCTTGGCATTTTCCTCTGGTGGGTCTTCTGATTCCACCACTTTGAGGACAAATATGTCTTCTTTGAGTAGGGAACTGGTCTTCCTCATTCTTCAATTTCTCGAGGAAGAGAAATTCAGAGATACTGTACACAGGTTGGAGCTAGAATCGGGTTTGTTCTTCAATGTGAAGTATTTTGAAGAGAAAGTCCTGGCCGGAGAGTGGGACGATGTTGAGAAATACCTCTCTGGATTTACCAAAGTTGATGACAATCGATACTCCATGAAGATTTTCTTTGAGATTAGGAAGCAGAAGTATCTTGAAGCCTTGGACAGGAATGACAAAGTGAGAGCTGTTGAAATTCTGGTGAATGATTTGAAAGCTTTTTCATCATTTAACGAAGATTTGTTCAAAGAAATAACACATCTTCTAACTCTCAACAATTTCAGGGAAAATGAACAGTTATCAAAGTATGGTGATACTAAATCAGCTCGAAATATAATGCTTGTAGAACTTAAGAAATTGATCGAAGCAAATCCCCTCTTTCGTGATAAGCTTATATTTCCTTCTTTCAAGACATCACGGTTACGAACTTTGATTAATCAAAGTTTGAACTGGCAGCATCAGCTGTGCAAGAACCCAAGGCCAAATCCAGACATTAAAACTTTATTTGTTGACCATTCTTGTTCACCGTCAAATGGATCTCGTGCGCCTACTCCTGTCAACCTTCCAGTAGCAGCTGTTGCCAAGCCTTCATCTTATGTTCCCCTTGGACCACATGTAGGGCCATTTACACCAGTCCCAGCGGCTTCTAATGTGAATGCTATGGCGGGGTGGATGATGAATGGGATGAATGGGAATCCTTCCACATCTTCTCAATCACCTGTGGTTGCTGCTTCCTCATTGTCTGGTCCTCCAAATCAAGGTATAGCTGGGTCAGTTTGTAATCGTGTAATTAGCTTCTCTATCAGAGGCAGAAGAAACCATAATGAGACTGTCTCCATTTTGAAGCATCCAAGAACACCTAATGCTCTTGGTATGATGGATTATCAAAACAATGATAATGAGCAGCTAATGAAACGGTTGCGAACTGCACAGTCTGTTGATGAGGTTACATATCCTGCTCCACCTCAACAAACATCTTCCTTGTTTGATGACCTTCCTAGAACTGTTGTTTGCACATTACATCAGGGATCACCAGTCACAAGCATGGATTTTCATCCTTCCCTTCATTCGTTACTTGCTGTTGGTTCTGCAAATGGTGAAATTTCACTATGGGAAACAGGGCACAGAGAGAGGGTTTTATCAAAGCCTTTCAAAATGTGGAATGTTTCTGCTTGTTCTGTCTTATTTCAGGCTGCCATTATGAAAGACTCTTCTATATCCATTAGTCGCGTATCATGGAGTGCAGATGGGAATTTTGTTGGGGTTGCTTTTACTAAACATTTGATTGATGCTCATGTTGGTGGTGTTAATGACTTGGCATTTTCTAATCCAAACAAGATGATATGCATTGTAACTTGTGGAGATGATAAGTTAATTAAGGTATGGGATTTGACTGGAAAGAAGCTCTTCAATTTTGAAGGTCATGGAGCACCTGTTTATTCTATTTGTCCTCATCAGAAGGAAAATATCCAGTTTATATTTTCAACTTCTGTTGATGGTAAAATCAAGGCCTGGTTATATGATGACATGGGCTCCAGGGTGGACTATGATGCTCCTGGACAGTGGTGCACCACAATGCTCTATAGTGCTGATGGAAGTAGATTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTCTTTCCTGGTTGAGTGGAATGAAAGTGAAGGAACACTAAAAAGAACATATTCTGGGTTTAGAAAGAAATCTGCTGGCATTGTGCAATTTGACACAACAAAAGGTCACTTTTTGGCTGCTGGTGAAGATAACCAGATTAAGTTTTGGGATATGGATAATGTCAATGTTCTGATTAGTACAGATGCTGAGGGCGGTCTTCCTAGTCTCCCTCGCTTGAAGTTCAATAAAGAAGGAAATCTGCTTGCAGTTACTACAGCAGATGGTGGTTTTAAAGTCCTTGCTAATTCCGATGGCATCAAATACTTGAGGACTGTTGAAGCTCGGGCTTATGAAGCATCCAAAGCTACTTTTGAGACAAAGGTACCTGGATCTTCTGTGGTTGCAAACATCAGTCCGCTGATCAATAAAATAGAACATATGGACAGAAGCTCTCCTGCAGGACTGGCACCTAGCCATAATGGAGTTGATTCTATGCCTAGATGCATAGAGAGGAAAAGAAGTCTGGATGATGTATCTGACAAATCTAAGGCTTGGGAATGTACAGAAATAGTTGATCCCATTCAGTGTCGGACTGCTACTATGCCAGATAGTATGGATCCCACTAACAAGGTTGCTCGTCTTCTTTACACAAATTCTGGGGTTGGTCTTCTTGCTCTTGGCTCAAAAGGGATCCAGAGGCTGTGGAAATGGAGCCGTAATGAACTGAATCCTAGTGGAAAGGCCACAGCAAGTGTTGTTCCACAACATTGGCAACCAAATAGTGGTCTTCTCATGAATAATGATGTCCCAGACAGTTCTGAAGCTGTATTTCCTAGCATAGCACTCTCAAAGAATGATTCATATGTTATGTCAGCATGTGGAGGAAAAATTTCACTGTTCAACATGATGACATTTAAGGTGATGGCAACTTTTATGGCACCTCCCCCTATTTCAACCTTTCTTGCATTTCATCCTCAAGATAATAATATCATTGCAATTGGAATGGAAGATTCAACAATTCATATTTACAATGTTAGGGTAGATGAGGTCAAATCTAAATTGAAGGGTCACCATAAGCGCATTACTGGTTTAGCTTTTTCAGCCCAGTTGAATGTCTTGGTTTCATCAGGTGCTGATGGTCAGCTTTTCTTTTGGAGCATTGACTCATGGGATAAAAAGAAATCACTATCAATTCAAATGCCATCTGGAAATGCAGCCGTTGGTGATACTAGAGTGCAATTCCACATTGATCAAGTAAATTTACTGGCATGCCATGAGACTCAATTAGCTATATATGATGCTTCAAAAATGGAATTGATTCGACAGTGGGTGCCACAAGATGGGTTGTTTGGTTCCATATCCTCTGCAACATATTCCTGCAATAGTCAACTAGTTTATGCTACTTTTACTGATGGAAATATTGGAGTATTTGATGCCGACACCCTCAGACTAAGATGTCGTATAGCTTCATCAGCATACCTACATCAGACCACATTAAACAGCCAAAATGTATATCCTATTGTTGTTACAGCACATCCACAAGAGGCCAATCAATTTGCAATTGGACTGTCTGATGGGTCAATTAAGGTTATTGAGCCCAGAGAGTGTGATGGGAGATGGGGAATTAAAGCACATGTTGATGGTGCAATGCAGAATGGTAGGACAGCGTCGCCCTCAACTACAAAATAGATTGACCGAGCTCCTCCAATTAAAAACATCATATGATTCATGTGCATCGCTCTTGTTTCTTAGTTATTAATACAATAATATATAGTAAAACTTTTAAGGTTGAATGTTTCTAATTGTGCTTTGGATGCTTACAAGGAGGTGTAGGTAGAGAAACCTTGTGCATATAAATATACATAATAAAGTTGATAGTATATTATTAATTG 3987 0.4046 MSSLSRELVFLILQFLEEEKFRDTVHRLELESGLFFNVKYFEEKVLAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRNDKVRAVEILVNDLKAFSSFNEDLFKEITHLLTLNNFRENEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLIFPSFKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPSNGSRAPTPVNLPVAAVAKPSSYVPLGPHVGPFTPVPAASNVNAMAGWMMNGMNGNPSTSSQSPVVAASSLSGPPNQGIAGSVCNRVISFSIRGRRNHNETVSILKHPRTPNALGMMDYQNNDNEQLMKRLRTAQSVDEVTYPAPPQQTSSLFDDLPRTVVCTLHQGSPVTSMDFHPSLHSLLAVGSANGEISLWETGHRERVLSKPFKMWNVSACSVLFQAAIMKDSSISISRVSWSADGNFVGVAFTKHLIDAHVGGVNDLAFSNPNKMICIVTCGDDKLIKVWDLTGKKLFNFEGHGAPVYSICPHQKENIQFIFSTSVDGKIKAWLYDDMGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTLKRTYSGFRKKSAGIVQFDTTKGHFLAAGEDNQIKFWDMDNVNVLISTDAEGGLPSLPRLKFNKEGNLLAVTTADGGFKVLANSDGIKYLRTVEARAYEASKATFETKVPGSSVVANISPLINKIEHMDRSSPAGLAPSHNGVDSMPRCIERKRSLDDVSDKSKAWECTEIVDPIQCRTATMPDSMDPTNKVARLLYTNSGVGLLALGSKGIQRLWKWSRNELNPSGKATASVVPQHWQPNSGLLMNNDVPDSSEAVFPSIALSKNDSYVMSACGGKISLFNMMTFKVMATFMAPPPISTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHHKRITGLAFSAQLNVLVSSGADGQLFFWSIDSWDKKKSLSIQMPSGNAAVGDTRVQFHIDQVNLLACHETQLAIYDASKMELIRQWVPQDGLFGSISSATYSCNSQLVYATFTDGNIGVFDADTLRLRCRIASSAYLHQTTLNSQNVYPIVVTAHPQEANQFAIGLSDGSIKVIEPRECDGRWGIKAHVDGAMQNGRTASPSTTK 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03120 1130 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Pste2g03120 1130 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Pste2g03120 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 957 - -
Pste2g03120 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 411 IPR001680 GO:0005515
Pste2g03120 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pste2g03120 1130 Gene3D - 976 1122 IPR015943 GO:0005515
Pste2g03120 1130 SMART Lish 4 36 IPR006594 GO:0005515
Pste2g03120 1130 Gene3D - 361 456 IPR015943 GO:0005515
Pste2g03120 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Pste2g03120 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 480 494 IPR019775 -
Pste2g03120 1130 Gene3D - 742 975 IPR015943 GO:0005515
Pste2g03120 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Pste2g03120 1130 Gene3D - 457 672 IPR015943 GO:0005515
Pste2g03120 1130 SMART WD40_4 1060 1100 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 495 536 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 915 954 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 872 912 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 838 869 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 1004 1046 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 539 582 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 585 625 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 452 493 IPR001680 GO:0005515
Pste2g03120 1130 SMART WD40_4 363 402 IPR001680 GO:0005515
Pste2g03120 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 494 IPR001680 GO:0005515
Pste2g03120 1130 SMART ctlh 34 92 IPR006595 -
Pste2g03120 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Pste2g03120 1130 SUPERFAMILY WD40 repeat-like 785 1099 IPR036322 GO:0005515
Pste2g03120 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1116 IPR027728 GO:0006355
Pste2g03120 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 373 959 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03120 Pste-Chr2 31108720 31118731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03120 363 569 Miscellaneous Gene Families AT5G08390 28.829 4.91e-09 58.9