Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03103 TTACAAGGAGAAAAACGAAGGGGTGCAAGGAGGAAAATACGATTTTTGCATGCAGAGATGGAAGGCCAGCAGTTTGGTTTATTCTAGCTCCACTTTTAAATATCTGCAAATCAATTGGGCCGTTCTTGCTAATAACGGAATGTCAGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATCGGTACCATTGAGGAAACGCCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAATCTTATTCCTTTTATTGGACAAAGATTTGTGTCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAACAATGTGGCTTTTCGATTAGACGACACCGAACTCGGGGGAAAGATGGGGTTGGCCGGGGAGTTACAAGGAGGGATTTTACTTGTCATCGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCTTCTCGTTGTGGTTGTCAAGCATACATGCGTATTGTGAAAAGGTCTGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCAATATCTCCTGATGACAAGAGTCGCGTATGCATGTTTGCTAAAGCTGGGATGTCAGTGAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGTGTCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACTTGTTGCAGTCTTTTAGAAATGTGGATAGGGATAATGATGCTATTGATTTGATTGGTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGCATATTGCATGGGCCTATAGTTCATCCATTCAATCATATGAGGCATTTGGCGATGCTGTAGTTTTTGATACAACCTACCGAGTAGATGCTTTTGATATGCTGTTGGGAATTTGGCTTGGTACTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACGAACTATATTGACAGATCATAATATGTGGCTGAAAGAAGCTATTGCGGTTGAATTGTCTGAAACTAAACATGCCTTTTGTATATGGCATATTCTTTCTAAATTCTCTGACTGGTTTTCTTTACCTCTTGGATCACAATATGATGAATGGAAAGTTGAGTTCCACCGGCTCTACAATTTGGAATTGGTGGAAGATTTTGAAGAGGGCTGGAGGCAAATGGTTGATAAATATGGACTTCATGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGCGTTACTTCTTCGCAGGATTGGCCAGTACATGTCAGTCTGAGTCCATTAATGCTTTCATCCAACGGTTCTTGAGTGCCCAGTCTCAACTAGACCACTTTTTGGAGCAAGTGGCAGATATTGTTGATTTTAATGACCGAGCTGGAGCAAAGCAAAAGATGCAAAGGAAAATGCAAAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCAACTGTACTTACTCCTTATGCCTTATGTAAACTCCAGGAAGAGCTCGTTTTGGCACCACAATATGCATCCTTTCTAGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGTCAGATGGAGGGTGTAAAGTATTTTGGGTTCCTTGTCAAGAGCATATCAGCTGCAGCTGCCATCTGTTTGAGTTTACAGGCGTCTTGTGTAGGCATGTGCTACGTGTCATGTCAACTAATAACTGTTTTCACATCCCTGATCAATATTTATCAACCCGTTGGCGAGGCATCAATTCACCTTCTGTCAACCACTTTCGAGGTACAAATAATAGGGATCAGCCTGAAAGGATACAATTTTTGCAATCCATGGTTTCAACATTTTTAGTGGAATCCATTGAAACTGAGGAACGCCTGGATGTTGCTTGTGAGCAAATTTCCATGGTGCTATCACGCATCAAAATCCTTCCTAGGTCCCCTCATGGAGTGAATGACATTGCGGATAGTTATCCGCCAGATTCGTTGATCCTCCCAGAGGTAGAAGATACTGATGGAATGATTCATGGCTTTACAAATACAAACCCCCATGATTCTATTACTACAGGAAAACTAAAGGAAAGAAGGGCGAGAGATGGGGTCGATCTCTCTAGGAAGCGTAGGCAGTTCTCTGCTGCGTTGTGTGCTCAATATGGACATGATGCATCTGATTGCTCAATCATGGCGGGTGACAATATGAATGGAGATGCTTTAGGTTACAAGGAGAAAAACGAAGGGGTGCAAGGAGGAAAATACGATTTTTGCATGCAGAGATGGAAGGCCAGCAGTTTGGTTTATTCTAGCTCCACTGAAACCAAATTGAAGGCAGAAACTTCTGAGGTTGCAGCATGGGCCTTCTATCTTGTGTCCACTTTCCTGAAAAAGTGTGGCAAAGGAAACTTTGGCATGTCAAGATTCTTGCACACGAACAATTCTGAACGCAAGTTTATTTTATCTGGTGCTAATGAATCATATTATGGACATGTGAACAAGAGATCCTACTCTTCATTTTATATGGCAGCGGCTGGAACTGAGTATAGGACTGCAAGTGCTGGAATCAAGATGCCAATTATGGGAAGTGAAGGCTTCATGCGTTCAAGTTATTTGTCGATGGCTAAAAGAAATTCAAGAATGATCCATTTCAGTAGCAAGAATAGTTTCACGCCACCGGTGAACCCAGATCAGATTGTTCCAAGTTCTGAAATCCATAACATAGCTAACGAGATTGTGAAGATACCGGACCTCCCGAGTTGGATGTATCAATGCTTCCCCAAGATAGCTTCCTGTGATGCAGCAGAACCATGGCAATTAGGATTTCAAGATGCTGCAACACCCATAATGCAAGGCATAATAGACTTGCATCACGATATCTTTTTCTTCCTTACTCAGATCTTGGTTTTTGTATTATGGATGTTGGCTCGCGCTTTATGGCATTTCAGGCATAAGGTAAATCCAATTCCGCAGAGGATTGTTCATGGAACAACAATCGAGATTCTTTGGACCATATTTCCTAGTATTATCTTGATGTTCATTGCTATACCATCATTCACTCTGTTATACTCAATGGACGATGTGATAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATTGGAGTTATGAATATTCAGACTATAACACTTCTGATGAACAGGCACTTGCTTTTGATAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATTACGTTTGTTAGAAGTGGACAACAGAGTGGTAGTACCAGCCAAAACTCATTTACGTGTTATTATAACATCGGCTGATGTACTTCATAGTTGGGCAGTGCCTTCCTTAGGTGTCAAATGCGATGCTGTACCTGGTCGCTTAAATCAAATATCTACTTTTATACAACGAGAAGGGGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTATGCCTATTGTCGTAGAAGCAGTTCCTACTAAAGATTATAGTGCTTGGGTTTCCAGTCAATTTATTTGTGATATGAGTATTTATGCTCTCAATTTTCTCACTCTAAATGTGTTTGTGCTAGCATTTGGTATTGTGGGTGAGATTCCT 3694 0.4085 MQRWKASSLVYSSSTFKYLQINWAVLANNGMSEGTSLVLESSENGTDLSQDDIGTIEETPEETILSRQTSVNLIPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSDFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRVCMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIGMCKRLKDENHNFKYEFKIDSNNRLEHIAWAYSSSIQSYEAFGDAVVFDTTYRVDAFDMLLGIWLGTFLGFMKGKAPRTILTDHNMWLKEAIAVELSETKHAFCIWHILSKFSDWFSLPLGSQYDEWKVEFHRLYNLELVEDFEEGWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLASTCQSESINAFIQRFLSAQSQLDHFLEQVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATVLTPYALCKLQEELVLAPQYASFLVDEGCFQVRHHSQSDGGCKVFWVPCQEHISCSCHLFEFTGVLCRHVLRVMSTNNCFHIPDQYLSTRWRGINSPSVNHFRGTNNRDQPERIQFLQSMVSTFLVESIETEERLDVACEQISMVLSRIKILPRSPHGVNDIADSYPPDSLILPEVEDTDGMIHGFTNTNPHDSITTGKLKERRARDGVDLSRKRRQFSAALCAQYGHDASDCSIMAGDNMNGDALGYKEKNEGVQGGKYDFCMQRWKASSLVYSSSTETKLKAETSEVAAWAFYLVSTFLKKCGKGNFGMSRFLHTNNSERKFILSGANESYYGHVNKRSYSSFYMAAAGTEYRTASAGIKMPIMGSEGFMRSSYLSMAKRNSRMIHFSSKNSFTPPVNPDQIVPSSEIHNIANEIVKIPDLPSWMYQCFPKIASCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFLTQILVFVLWMLARALWHFRHKVNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFTLLYSMDDVIVDPAITIKAIGHQWYWSYEYSDYNTSDEQALAFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRVIITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFMPIVVEAVPTKDYSAWVSSQFICDMSIYALNFLTLNVFVLAFGIVGEIP 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03103 1215 Gene3D - 1047 1187 IPR008972 -
Pste2g03103 1215 SUPERFAMILY Cytochrome c oxidase subunit II-like, transmembrane region 945 1044 IPR036257 -
Pste2g03103 1215 ProSiteProfiles Cytochrome oxidase subunit II transmembrane region profile. 950 1045 IPR011759 GO:0016020|GO:0022900
Pste2g03103 1215 SUPERFAMILY Cupredoxins 1047 1186 IPR008972 -
Pste2g03103 1215 CDD CcO_II_C 1048 1182 IPR034210 -
Pste2g03103 1215 ProSiteProfiles Zinc finger SWIM-type profile. 556 589 IPR007527 GO:0008270
Pste2g03103 1215 SMART 26again6 564 591 IPR006564 GO:0008270
Pste2g03103 1215 Gene3D - 937 1045 IPR036257 -
Pste2g03103 1215 FunFam Cytochrome c oxidase subunit 2 937 1045 - -
Pste2g03103 1215 Pfam Cytochrome C oxidase subunit II, periplasmic domain 1050 1174 IPR002429 GO:0004129|GO:0005507|GO:0016020
Pste2g03103 1215 Pfam FAR1 DNA-binding domain 89 182 IPR004330 -
Pste2g03103 1215 ProSiteProfiles Cytochrome oxidase subunit II copper A binding domain profile. 1047 1185 IPR002429 GO:0004129|GO:0005507|GO:0016020
Pste2g03103 1215 Pfam Cytochrome C oxidase subunit II, transmembrane domain 951 1037 IPR011759 GO:0016020|GO:0022900
Pste2g03103 1215 PANTHER CYTOCHROME C OXIDASE, SUBUNIT II 936 1186 IPR045187 GO:0004129
Pste2g03103 1215 Pfam MULE transposase domain 326 369 IPR018289 -
Pste2g03103 1215 ProSitePatterns CO II and nitrous oxide reductase dinuclear copper centers signature. 1119 1167 IPR001505 GO:0005507
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1023 1043 - -
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1094 1115 - -
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1046 1065 - -
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1118 1138 - -
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1156 1173 - -
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1138 1155 - -
Pste2g03103 1215 PRINTS Cytochrome c oxidase subunit II signature 1011 1023 - -
Pste2g03103 1215 FunFam Cytochrome c oxidase subunit 2 1047 1185 - -
Pste2g03103 1215 Pfam SWIM zinc finger 561 586 IPR007527 GO:0008270
Pste2g03103 1215 NCBIfam cytochrome c oxidase subunit II 962 1183 IPR014222 GO:0016020|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03103 Pste-Chr2 30971964 30987246 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pste2g03103 COX2 2e-63 CL0026