Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03101 ATGAATCTCAGCAACAGCAAGGGATCCACTTCCAGTTCTCATCTCAAAACTGCTGACGCCGCACCAGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTTGTGGTCGATGATGACCCCACATGCCTTATGATCCTTGAGAGGATGCTGCGTGCTTGTCTCTACGAAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCTCTTCTGAGAGAGAACAAGAACGGGTTTGATATTGTTTTAAGCGATGTGCATATGCCGGACATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCTGATGATGGAAAAAATGTGGTGATGAAAGGGGTGACACATGGTGCTTGTGATTACCTTATTAAACCTGTGCGGATTGAGGCTTTGAAGAACATATGGCAACATGTGATTCGGAAGAGAAAGAATGGGTCGAAAGATGTGGAGCAATCGGGTAGTGTGGAAGAAGGAGATCGGCCTCAAAGGGGATCTGATGATGGAGATTACTCGTCTTCAGTGAATGAAGGCAAAAGCTCAAAGAAGAGGAGGGATGAGGATGAAGATGGAGATGAGAGAGACGACACATCCACGCTGAAGAAGCCACGAATTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCTGTTCCTAAAAAGATTTTAGAATTGATGAACGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTAGAAGGCTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAACAGCTTCATCGGCTCACAAGAAGCATCATTTGGGGCAACCTCAATCAATGGAATTGATCTTCAAACTCTTCAAGCTGTGGGCCAGCTCCCAGCACAAAGTCTAGTCAAGCTTCAAGGCGCAGGACTTGGCAGGACAACTGCTAAAGCAGGTGTGCCTATGTCTCTATCTGATCAAAAGAACCTTTTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAGGGGCAACTACAACATTTAGGCAACAATAAACCAATAAACTTGCTTCATGGAATTCGTACCAACATGGAGCCAAAACAACTTGCCAATTTGCACCAATCTAGCCAATCTCTTGGTAACTTGAATATGCGAGTCAGTTCTACCACACAGAACAACCCATTGTTGATGCAGATGACTCAGTCTCAACCAAGAGGTCATATGCTAAGTGAAAAAACTGGTTCTCATGTAACCAGGTTTCCATCGTCTTTGGTGCAGCCTACAGTATCAAATGGTATTTCTAATGGTGTTTTGGGAAATGGGATTGCTGGCACCAGCAACATTACTGCCTCTTATAATCCAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATGAACCAAACCAATGAAATGTCTGTTAGTAGTTTCTCTCTTAGAAGCACTCCGGGCATAACTAGTAGTATCCCATCTAAAGGCCTGTTTCATGAAGAAGGTACCTCTGATATTAAAGGACCCGGTGGATTTGTTCAAGATTATGATATATTTAATGAACTCCACCATCAGAAGCCCCATGATTGGGACTTAACAAACACAGGCATGACATATGATGCTTCTCAGCATGCAAATCCTTTACAAGCTAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGAGTTTTCCCTCTATGCAACAGACTGTACAAAATAGAGATACTACTATTGGAAAAGCTATGTTCTCCACAGGTGAAGGCATACATCAAAGTAGTCTCCAGAATGTTGGTCAACACCACAATAATCTTCTTGTTGACAATTCAGTAAGGGTTAAGGCTGAAAAAATTCTCGATCCAGGCTCCCAGATTAATAACCTCTTCTCTGACCAATATGGTCAGGACGATCTTGTCAGTGCATTTCTTAAACAGGAAGGCATTGGACCATCTGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCCAGTTTAGAACAGATCCTGCCAGTTCTCTTCCTAATTGGCGTCGCCAATGTAAAAATAGTTGGCGTTCCACATGAACCAAATCACTCTGCAATTAGTTACTTTGGACATTAGTTAAAATTTTTCAACAATAGAATTTAGTCATGTAAAAATTCAGGCTTCGGGGAGTAGTATGTTATTATGATTTAGTCTGGATGCTTAAGATCATGAATGAATAACAAACTTTAAATGCATATATGCAAAAGGCATATTTGCAATTTTTTTGTTGCTTTCCTTTGCAA 2290 0.4205 MNLSNSKGSTSSSHLKTADAAPVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGSKDVEQSGSVEEGDRPQRGSDDGDYSSSVNEGKSSKKRRDEDEDGDERDDTSTLKKPRIVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLNSFIGSQEASFGATSINGIDLQTLQAVGQLPAQSLVKLQGAGLGRTTAKAGVPMSLSDQKNLFSFENPRLRFGEGQLQHLGNNKPINLLHGIRTNMEPKQLANLHQSSQSLGNLNMRVSSTTQNNPLLMQMTQSQPRGHMLSEKTGSHVTRFPSSLVQPTVSNGISNGVLGNGIAGTSNITASYNPVPQNSSLLSFPMNQTNEMSVSSFSLRSTPGITSSIPSKGLFHEEGTSDIKGPGGFVQDYDIFNELHHQKPHDWDLTNTGMTYDASQHANPLQANIDVSPSVLVHQSFPSMQQTVQNRDTTIGKAMFSTGEGIHQSSLQNVGQHHNNLLVDNSVRVKAEKILDPGSQINNLFSDQYGQDDLVSAFLKQEGIGPSENEFDFDGYSLDNIPV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03101 672 PIRSF RR_ARR_type-B 4 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pste2g03101 672 FunFam Two-component response regulator 205 268 - -
Pste2g03101 672 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Pste2g03101 672 SUPERFAMILY CheY-like 30 151 IPR011006 -
Pste2g03101 672 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Pste2g03101 672 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Pste2g03101 672 MobiDBLite consensus disorder prediction 151 174 - -
Pste2g03101 672 MobiDBLite consensus disorder prediction 151 206 - -
Pste2g03101 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 265 IPR017930 -
Pste2g03101 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 360 IPR045279 GO:0009736
Pste2g03101 672 SMART REC_2 31 143 IPR001789 GO:0000160
Pste2g03101 672 Gene3D - 31 205 - -
Pste2g03101 672 MobiDBLite consensus disorder prediction 184 206 - -
Pste2g03101 672 FunFam Two-component response regulator 31 168 - -
Pste2g03101 672 Pfam Response regulator receiver domain 33 141 IPR001789 GO:0000160
Pste2g03101 672 CDD REC_typeB_ARR-like 33 147 - -
Pste2g03101 672 Gene3D - 206 268 - -
Pste2g03101 672 Pfam Myb-like DNA-binding domain 214 261 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03101 Pste-Chr2 30954808 30958292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03101 65 672 Response Regulator Gene Family AT3G16857 49.158 1.76e-172 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pste2g03101 Response_reg 1.5e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03101 2 30954808 30958292 Pste2g03101 2 30954808 30958292 ECH
Pste6g04048 6 29777890 29786188 Pste2g03101 2 30954808 30958292 PCT