LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03092	ATGCTCCCCCGCTTATTTTCAAGTGTCAAGTCCTCTGTAAAACTGGTTTTGTTAGATGAAGCGGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAGAGCACTAGGTTTGCACTTATCTGCAATCATGTAAACAAGATCATTCCTGCACTTCAATCAAGATGCACTCGGTTCCGGTTTGCCCCTCTTGATGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGTATGCTTCCTGTTCTCTATTATCTAGTTTGCATATGTCATTTGAATATTTTGATGCTGCTGTTCTAGTTGCTTCTGGTGGCAATGACACTTCTGGATTATGTATATGGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTCGTTCGGCTTAGTAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAACAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGGAATCCGTTGCCCAAAGACATTGAGCAAATATCGTATTGGCTTTTAAATGAACAATTTGCAGATAGCTTTAAAAGAATATATGAAATGAAGACAAAGAAAGGGTTGGCCCTGGTTGATATAGTCAGAGAAGTGACAATGTTTATTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAGTTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCAGCACTGGTTGCAGCTGCTACATAAGCCTACTTCTGAATCCGATCCATGGGGTTAAATTAACATACTATTAGGCCTGGCTTGTTTGATTTCCGTGGCAATGTCCCTACTGAGAAGAGAACGGGTTTGAGTGTAAAGTGAATGTGTTTATCGTTTATAACTCAAGATGAGTTTTAACTTTTAAGTATTTTCCCAAAATTCTGAAGTAGGACATCTGTTTTTAATTTTACTTCTTTTATATTTACTGCTATTTTTGATGAAACCATTAGTTAGGTTTTCAAAGTTACGATCAGTTCGTCTTTTTAACATCAATGCAATGAAAACCCTCGGAATGACTGGAAAGTGGTGAATGGTGAAAGGCAGATCGTGT	1159	0.3857	MLPRLFSSVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGYASCSLLSSLHMSFEYFDAAVLVASGGNDTSGLCIWLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEMKTKKGLALVDIVREVTMFIFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT	271

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03092	271	FunFam	Replication factor C subunit 5	172	269	-	-
	Pste2g03092	271	Gene3D	-	124	171	-	-
	Pste2g03092	271	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	10	253	-	-
	Pste2g03092	271	Pfam	Replication factor C C-terminal domain	172	258	IPR013748	-
	Pste2g03092	271	SUPERFAMILY	post-AAA+ oligomerization domain-like	172	262	IPR008921	GO:0003677\|GO:0006260
	Pste2g03092	271	CDD	HLD_clamp_RFC	71	169	-	-
	Pste2g03092	271	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	7	90	IPR027417	-
	Pste2g03092	271	Pfam	DNA polymerase III, delta subunit	7	71	-	-
	Pste2g03092	271	Gene3D	-	172	269	-	-
	Pste2g03092	271	Gene3D	-	4	70	IPR027417	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03092	Pste-Chr2	30888273	30900684	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03092	6	270	Core DNA Replication Machinery Family	AT1G77470	69.597	5.66e-130	371

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