Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03079 ATGGTTGCAACTCTGCTGTCTTGTGGGGCAAGGCCAAACTTGGTTACGGATCCAACTCCAAAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAAGGGATGTGATGGCTTAGCTGCTTACCTTTCTGAGAAGTCCCTGGTTGAGCAGTTTAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCGCTGGAAACTAGCACAACTGATCCAGTAAATGCTGAGAACCTTACTGAGGACCAACTGTACCTAAAGGAGACTTTGGCAGCTTACCGTACAGCTGCCGAGGCAGCAGCACGCATTCAAGCTGCATTTAGGGAGCATTCATTTAAAATACGGTATAAGGCTGTTGAAATTATCAGCCCAGAGAAAGAAGCACGTCAAATAGTAGCAGCAATGACGATTCAACATGCCTTTCGCAGTTACGAGACAAGGAAAAAGATGGCAGCTGCTGCTCGGATTCAGCTTAGATTCCGTACATGGAAGCACCGTAAAGAATTTCTTAACATGCGGCGTCAGGCTATCAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGTGCGGAGGCAATATCAGAAAATCGTATGGTCTGTTGGGGTGCTAGAGAAAGCAATCCTGCGCTGGCGTCTAAAGAGAAAAGGCTTCCGTGGACTTCAAGTTAATTCCACTGAGGAAGAGAAGCAGGAACGTGATGTGGTGGAGGAAGTTTTCTTTCGGAGCAGCCGGAAACAAGCTGAAGAACGCATAGAGAGGTCTGTTGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGGATGAAGCTGGCGCATAATCAAGCTAAACTGGAACTGGAATTGGAAGAGTTCCTCAATTCTGAAGTTGACATGTTACCCAAGACATAGATCGGTCTCTTCCCAAAACAGGGTTCCCCCATTATGGGGATGTAGCCAAATCCTGTAACGAACTAATGTCTAGTGAGTAGTGTTAGCTTGGTGTCTTTTTCTGTACAGCAAGTAGATCCTGTAAATTTCCTAGTGTAGATCTGAAGTCATGACCCTTTCTACTGCTTTAGTGTCTTGAAAGGGTCATCTGTGTGTGATTAAGCGCTTACGAGGTATGCTTCTGATGCTACATCAAGTTTGTAACTCTATTTGTTTGTGGAAAATCAAGTTTGTAAACTGAAATAACAAGCCTTCTAAGATGAATTGAAATAATTATTGTCAGAACTCTTCTATGTAATAAATTAAGAGTCTACTGCATGA 1263 0.4355 MVATLLSCGARPNLVTDPTPKNPGGCTAADLAYMKGCDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTTDPVNAENLTEDQLYLKETLAAYRTAAEAAARIQAAFREHSFKIRYKAVEIISPEKEARQIVAAMTIQHAFRSYETRKKMAAAARIQLRFRTWKHRKEFLNMRRQAIKIQAAFRGFQVRRQYQKIVWSVGVLEKAILRWRLKRKGFRGLQVNSTEEEKQERDVVEEVFFRSSRKQAEERIERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLELELEEFLNSEVDMLPKT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03079 300 ProSiteProfiles IQ motif profile. 250 279 IPR000048 GO:0005515
Pste2g03079 300 SMART iq_5 95 117 IPR000048 GO:0005515
Pste2g03079 300 SMART iq_5 129 151 IPR000048 GO:0005515
Pste2g03079 300 SMART iq_5 249 271 IPR000048 GO:0005515
Pste2g03079 300 SMART iq_5 171 193 IPR000048 GO:0005515
Pste2g03079 300 ProSiteProfiles IQ motif profile. 96 125 IPR000048 GO:0005515
Pste2g03079 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 199 IPR027417 -
Pste2g03079 300 Coils Coil 263 283 - -
Pste2g03079 300 Gene3D - 151 196 - -
Pste2g03079 300 Gene3D - 95 150 - -
Pste2g03079 300 Pfam IQ calmodulin-binding motif 174 193 IPR000048 GO:0005515
Pste2g03079 300 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 279 - -
Pste2g03079 300 FunFam Calmodulin-binding transcription activator 2 149 196 - -
Pste2g03079 300 ProSiteProfiles IQ motif profile. 130 159 IPR000048 GO:0005515
Pste2g03079 300 ProSiteProfiles IQ motif profile. 172 196 IPR000048 GO:0005515
Pste2g03079 300 ProSiteProfiles IQ motif profile. 149 178 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03079 Pste-Chr2 30737262 30739116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03079 1 283 CAMTA Transcription Factor Family AT3G16940 65.141 4.70e-113 343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03079 2 30737262 30739116 Pste2g03079 2 30737262 30739116 ECH
Pste6g04024 6 29507135 29516861 Pste2g03079 2 30737262 30739116 PCT