Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03024 GAGTGAGTGAGGGAGTGAGAAATGGGGAAAGAAGAGAAGCGTTGTAGGGATAAAAAATGAAAAAGAATTAGAAAGGATGGCGTGGAGAGAGAGAGAGAGAGAGAAGGAGAGGATGGAGTCGATGAGCAAAGCGATAGCGCAGTACACGGAAGACGCTCGGCTACATGCGGTGTTCGAGCAGTCGGGAGAGTCAGGCAGGTCGTTCGACTACTCTGAATCGATACGGATGACGACGGAATCCGTTCCGGAGCAGCAGATAACGGCGTACCTTGTTAAAATCCAGCGTGGCGGGTTCATCCAGCCTTTCGGGTCTATGATCGCCGTGGCGGAGGCTTCCTTCCGCATCGTTGGTTACTCTGAGAACGCCCGCGACATGCTTGGCATTACTCCCCAGTCTGTCCCCTCTCTTGACGACGATTCAGTTGATCCCTTCTCCCTCGGCACCGATGTTCGCACCCTCTTCTCTCCCTCCAGCTCTTTACTCCTCCAGAAGGCTTTCTCCGCCCGCGAAATTAGCCTCTTGAACCCTATCTTGATCCACTCCCGCACCTCCGGTAAGCCTTTCTACGCCATCCTTCACCGTATTGACGTCGCTATTGTCATCGATTTGGAGCCTGCCCGCACCGAGGATCCCGCCCTCTCCATCGCCGGCGCCGTTCAGTCTCAGAAGCTCGCCGTTCGCGCCATTTCCCAGCTCCAGTCCCTCCCCGGCGGTGATGTTCAGCTTCTCTGCGATACTGTTGTTCTCAGTGTCCGTGACTTGACCGGCTATGATCGCGTTATGGTTTATAAGTTTCACGAGGATGAGCATGGCGAGGTTGTTGCCGAGAGTAAGCGGCCTGATTTGGAGCCTTACATTGGTTTGCATTATCCCTCTACTGATATTCCTCAGGCTTCTAGGTTCTTGTTTAAGCAGAATAGGGTTCGGATGATTGTTGATTGCCATGCTTCTTCTGTCAGGGTTCTTCAGGATGACTCTCTTGTTCAGCCTCTTTGTTTGGTTGGCTCCACTCTCCGTGCCCCTCATGGCTGTCATGCTCAGTATATGGCTAACATGGGCTCCATTGCCTCCTTGGTCATGGCCGTTATTATTAATGCGAACGATGACGACGGTGTTCCTGCCCGTAGTTCCATGAGGCTTTGGGGTCTTGTTGTTTGCCATCACACTTCTTCTAGGTCTATTCCCTTTCCTTTGAGGTATGCCTGTGAGTTTCTCATGCAGGCCTTTGGGCTCCAGTTGAACATGGAGCTTCAGTTGGCCGCCCAGTCTTTGGAGAAGCGTGTCTTGAGGACCCAGACTCTCTTGTGTGATATGCTTCTTAGGGACTCCCCTACCGGCATTGTCACTCAGACTCCTAATATTATGGACTTGGTCAAGTGTGATGGAGCTGCTCTCTACTACCATGGGAACTATTATCCTTTAGGTGTGACTCCTACCGAGGCTCAGATAAAGGATATTATTGAGTGGTTGTTGGCCTTCCATGGAGATTCCACCGGTTTGAGTACTGATAGTCTGGCTGATGCTGGCTATCCCGGGGCTGCCTCGCTTGGGGATGCAGTTTGTGGGATGGCTGTCGCTTACATCACCGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGCAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCATCCGGAGGACAAGGATGATGGCCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGTAGCTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGTGACTCATTCAAGGATGCTGAGCATAGCAATTCTAAGGCTGTTGTTGATCCTCGTATGACGGAACTAGAGTTGCAAGGGGTTGATGAACTAAGTTCTGTGGCCAGAGAGATGGTTAGATTGATAGAAACAGCTACTGCCCCTATATTTGCTGTTGATGCTGATGGCCACATAAATGGATGGAATGCAAAGGTTTCAGAATTGACAGGACTCCCTGTTGAGGATGCTATGGGCAAGTCCTTGATTCGCGATCTTGTGTTTAAGGAGTCAGAAGAAACTGTGGACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAGGACGTTTGGCCCAGAACATGAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTGATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATCGTACATAGTCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACACTGCAATGGAAAAGCTTACTGGTTGGGGCCGTGCAGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATTCAATAACAAAGTTAATGATTGTCTTGCACAATGCACTTGGTGGACAAGATACAGATAAATTCCCTTTTTCATTTCTTGACCGGCATGGAAAGTATGTACAAACTTTACTGACTGCAAATAAGAGGGTTAATATGAGCGGTCAGATAATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTGAAGGCACAGAGACAACAAGAGAAGAATTCCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAGTTAAGAATCCTTTGAGTGGCATACGCTTTACAAATTCTCTTTTGGAGGCTACAGGCTTGACTGATGAGCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTGAAGATAATACGCGATGTTGATCTTGAAAGCATTGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTAGGAAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTACTGTTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTGTTGTCTGATTTCTTATTGAATATAGTTCGGTATGCACCCTCTCCGGATGGCTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCAGATGGACTTACTCTTCTCCATGCTGAATTTAGAATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAAGACATGTTCAACAGCAGTCGGTGGGTGAGTCAAGAAGGTTTAGGGCTGAGCATGAGCAGAAAAATTCTAAAGCTAATGAACGGCGAAGTGCAGTATATCAGGGAGGCAGAACGGTGCTACTTTTTTGTTCTTCTTGAACTACCTATGACACGGAGAAGCTCTAAAAAGTGTTGAATAGGTATTCTGTAGCTGCAAGATAAAGTTCACAGCCCTGGCGCTCTGCCCCTCGTGCTGACCGTTAGATAGTTGGTGGTGTTATAGATTTGCTCACCTAACAAGGCAACTTAAGGGACAAGAATTTGAACAAGCTGGTTTGGCTAGTTATCCCCGTCACGTGTAATTCTACCAAATTGGACTGTTTGTTTTGCACCCTGACAAAAAACTTGTTCGATCGGTACAGCAAGAGTGGCTAGTTAATATGTAGCTAAATGTAACCTTAAATCTTACATGATAAAGTTGTGGCAGAGTAGATGCAATGCTGTGTCGCCAATATGAGCACATCTTCATGGCCAAGTGGAGTCTCCTGTGAAAATTTTCAAGTAAACGCTTACATCATTAGCAGCTGCAGTGAACTCCAATCTATAGTTGGATTGAACTGCATCCATCTCCCGCACTGTTGTCTGTTCTGATAGTAACTGTTTATACCAAATGTGTTTCCCAAGTTCGCAAATAATTGTAAAATCTTAGTCTCCATCAAGGTTTACCCTCTGCAAAGTTTCTTTCCAACTCCCCACCTTTTTTTTCATCATTGCCTGTAAATCCCTTCCCGCTCTAATAAAAGATGGGTTATTTATCCTGTATTTTTCGAAATTTCATGAAATCTAG 4075 0.4552 MAWREREREKERMESMSKAIAQYTEDARLHAVFEQSGESGRSFDYSESIRMTTESVPEQQITAYLVKIQRGGFIQPFGSMIAVAEASFRIVGYSENARDMLGITPQSVPSLDDDSVDPFSLGTDVRTLFSPSSSLLLQKAFSAREISLLNPILIHSRTSGKPFYAILHRIDVAIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVQLLCDTVVLSVRDLTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASSVRVLQDDSLVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINANDDDGVPARSSMRLWGLVVCHHTSSRSIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQTPNIMDLVKCDGAALYYHGNYYPLGVTPTEAQIKDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHSNSKAVVDPRMTELELQGVDELSSVAREMVRLIETATAPIFAVDADGHINGWNAKVSELTGLPVEDAMGKSLIRDLVFKESEETVDKLLSRALKGEEDKNVEIKLRTFGPEHENKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDSITKLMIVLHNALGGQDTDKFPFSFLDRHGKYVQTLLTANKRVNMSGQIIGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLEATGLTDEQKQFLETSAACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVHPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFNSSRWVSQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPMTRRSSKKC 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03024 1115 PANTHER OS08G0260000 PROTEIN 58 944 - -
Pste2g03024 1115 PIRSF Phytochrome_conventional 3 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pste2g03024 1115 SMART gaf_1 214 402 IPR003018 GO:0005515
Pste2g03024 1115 SMART HKATPase_4 994 1109 IPR003594 -
Pste2g03024 1115 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 994 1101 IPR003594 -
Pste2g03024 1115 ProSitePatterns Phytochrome chromophore attachment site signature. 314 323 IPR013516 -
Pste2g03024 1115 CDD PAS 752 860 IPR000014 -
Pste2g03024 1115 SUPERFAMILY GAF domain-like 194 389 - -
Pste2g03024 1115 Gene3D - 865 945 - -
Pste2g03024 1115 ProSiteProfiles Histidine kinase domain profile. 889 1109 IPR005467 -
Pste2g03024 1115 SUPERFAMILY GAF domain-like 400 577 - -
Pste2g03024 1115 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 182 IPR035965 -
Pste2g03024 1115 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 859 IPR035965 -
Pste2g03024 1115 Pfam GAF domain 214 392 IPR003018 GO:0005515
Pste2g03024 1115 NCBIfam PAS domain S-box protein 614 729 IPR000014 -
Pste2g03024 1115 CDD HisKA 882 938 IPR003661 GO:0000155|GO:0007165
Pste2g03024 1115 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1105 IPR036890 -
Pste2g03024 1115 Gene3D PAS domain 602 735 - -
Pste2g03024 1115 SMART HisKA_10 882 946 IPR003661 GO:0000155|GO:0007165
Pste2g03024 1115 Pfam PAS fold 63 181 IPR013654 GO:0006355
Pste2g03024 1115 SUPERFAMILY PYP-like sensor domain (PAS domain) 612 721 IPR035965 -
Pste2g03024 1115 CDD PAS 618 725 IPR000014 -
Pste2g03024 1115 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 214 382 IPR016132 -
Pste2g03024 1115 Gene3D - 946 1112 IPR036890 -
Pste2g03024 1115 Pfam His Kinase A (phospho-acceptor) domain 886 946 IPR003661 GO:0000155|GO:0007165
Pste2g03024 1115 CDD HATPase_Phy-like 993 1105 IPR044767 -
Pste2g03024 1115 Gene3D - 397 570 IPR043150 -
Pste2g03024 1115 FunFam Phytochrome 603 735 - -
Pste2g03024 1115 Gene3D - 195 553 IPR029016 -
Pste2g03024 1115 Pfam PAS fold 741 860 IPR013767 GO:0006355
Pste2g03024 1115 Pfam PAS fold 610 725 IPR013767 GO:0006355
Pste2g03024 1115 ProSiteProfiles PAS repeat profile. 607 678 IPR000014 -
Pste2g03024 1115 PRINTS Phytochrome signature 129 151 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 229 248 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 422 442 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 629 644 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 540 558 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 610 626 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 507 526 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 PRINTS Phytochrome signature 314 335 IPR001294 GO:0006355|GO:0009584
Pste2g03024 1115 FunFam Phytochrome 397 527 - -
Pste2g03024 1115 FunFam Phytochrome 945 1111 - -
Pste2g03024 1115 Gene3D PAS domain 754 864 - -
Pste2g03024 1115 FunFam Phytochrome 754 862 - -
Pste2g03024 1115 SMART pas_2 609 676 IPR000014 -
Pste2g03024 1115 SMART pas_2 68 137 IPR000014 -
Pste2g03024 1115 SMART pas_2 740 810 IPR000014 -
Pste2g03024 1115 Gene3D PAS domain 67 317 - -
Pste2g03024 1115 Coils Coil 6 26 - -
Pste2g03024 1115 FunFam Phytochrome 863 944 - -
Pste2g03024 1115 Pfam Phytochrome region 405 579 IPR013515 GO:0006355|GO:0009584
Pste2g03024 1115 ProSiteProfiles PAS repeat profile. 741 793 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03024 Pste-Chr2 30222922 30229660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03024 14 1107 Histidine Kinase Gene Family AT4G16250 75.091 0.0 1739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03024 2 30222922 30229660 Pste2g03024 2 30222922 30229660 ECH