Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03003 GTGGGGAAGAACCAAAGGAAATGTGGTTTTGAAGTTAGTCCGCGCTAACACGTTGGCCTCTGCCCCAAAGGAACACTCATCCTTTTCCTAGCCATGTAAGGAACAGTGCGAAGTGCAAACCTGAAATGGAAACGAAAAAGAAAAAGAATCACTTGATGCAAACCCATAAGTCATGCTTCCCTCCGTCTTCTGCTATATAACACTAATCAATGTAACACGCGAAATCTAAAACAATAATCAACATTAACCTAGTGTGAAAAAGACGTAATTAAGTAAAAGGCAACAAACATGTCATTGAGTCCTCCGAGAGAGAGAAACAATGGGCAAAGGCAATGGGAAGCGAGGACGTACCAGCTGTACTGGTGCTTCCAATGCAACCGCACGGTCCGCATCGCATCCAATAATAACAACCCGTCGGAGTCGGAGGTGGCCTGTCCGCGTTGCTTCGGCCAATTCATATGCGAAATAAACGTGCCCAGGCCAAGACTGTTGGTGGACTTCACAACACCGGACCCCTCCCCAGAAGCGCGTTTGCTCGAGGCCCTTTCCCTCATGATCGACCCACCCATCCGCCGCTTCCCGGGTCAAGTCCAGCCCCAGCACCAGCCCGAGGAAATCCCCGTCCACCACCGCCAACGCCGACGCCTCCGACGCCGCAACCCCGACCCCGAGCACGAACCCCACCGCCCGCGCACCTGGATCGTCTTCCACCCCATGGGCCCGCCCAACCCCTTCGAGCCCATTAACAACTTCCCAGGCCCGCACGGACTGGACTCGCGAGACTTCTTCATGGGGCCGGGGCTGAACGAACTGATCGAGCAGATAACCGAGAACGATCGGCCGGGTCCTGCGCCGGCGCCGGAGAGGGCGATCGAGGCGATTCCGACGGTGGAAATCGAGAGCGCGCATCTGAAGGAGAATTCTCGGTGTCCTGTGTGTCAGGAGGACTTCGAAGTGGGTGGGGAAGCGAGGGAGCTTGAATGCAAACACATATATCACACTGATTGCATTGTTCCGTGGCTGCGGCTTCACAATTCATGCCCCGTGTGCCGCCACGAGGTGCCTGTGCAATCTTCGGAGGATGAATGCCTTGGAGATGAAGGACGACATTTTCCGTCTAACACTACTCCAACCTGGTTCACTGGAGCTAATCGGACGCATCCCTCTTGCTGTATTCTTTAATCTCATCGTTTACATTTTGAGATTTGTGAACTGATTAGGATTGTAACTTGTCTGTAACGGCAGCTAATGAACAAGGATGTCATGATCACAATGTGTTTTGCAGGGGCTGTGATTCAAAATTAAGTAAAATGGCCTTCAAGACTTCAAATTTCAATGAAAATAAAATTTGAATTCATCACCCAAGAGTAAGAAGTTAGAGATCCGTATAATAATACTACCATGTCATATTGCCATATGTGCTTGTTACCATGTTATATCAATGTGTACACTGTAAATACTATTTGTTATTGGCAATGACAATTA 1485 0.501 MSLSPPRERNNGQRQWEARTYQLYWCFQCNRTVRIASNNNNPSESEVACPRCFGQFICEINVPRPRLLVDFTTPDPSPEARLLEALSLMIDPPIRRFPGQVQPQHQPEEIPVHHRQRRRLRRRNPDPEHEPHRPRTWIVFHPMGPPNPFEPINNFPGPHGLDSRDFFMGPGLNELIEQITENDRPGPAPAPERAIEAIPTVEIESAHLKENSRCPVCQEDFEVGGEARELECKHIYHTDCIVPWLRLHNSCPVCRHEVPVQSSEDECLGDEGRHFPSNTTPTWFTGANRTHPSCCIL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03003 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 259 - -
Pste2g03003 297 SMART ring_2 214 254 IPR001841 -
Pste2g03003 297 MobiDBLite consensus disorder prediction 97 134 - -
Pste2g03003 297 Pfam Ring finger domain 213 255 IPR001841 -
Pste2g03003 297 Pfam zinc-ribbon 22 60 IPR039525 GO:0061630
Pste2g03003 297 SUPERFAMILY RING/U-box 194 261 - -
Pste2g03003 297 FunFam E3 ubiquitin-protein ligase RING1-like 177 261 - -
Pste2g03003 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 261 IPR013083 -
Pste2g03003 297 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03003 Pste-Chr2 30078584 30081323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03003 186 275 C3H Transcription Factor Family AT1G68180 48.889 7.15e-24 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03003 2 30078584 30081323 Pste2g03003 2 30078584 30081323 ECH