Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02974 ATGGTTGTGGATGCAACCATTGGGATTGACGATCTCGGAGAACTGAACTCAGGAACCAAACAGATTGAACGCCTCAGATTCAACAACCTTTTGATTATTATTGGGAGGAATCACTGCATCCCCCATGCACTGCAATTTGTTTCTAAGATGCACGGGAAGGGCCTTAAACTTGATGCATTCACATTCCCGTGTGCCCTCAAAGCCTGCAGTCTTCTTGGCCAGTTAACCCTGGGTAGACAGCTTCATTGTTGTATTATTAAGTCAGGGTTTGACTGTAGCTGTTATTGTTTATCAGCATTGATTGATATGTATTCAAATTTCAAGCTATTGGACGAAGCAATGAAAATATTTTATAAGAACTCTCATCTTGCTGAAAGCTTGACACTACGGAATTCCATGCTTTCTGGGTATGTTACCAATGAGGATTACGCAAAGGCTCTCAGTCTGGTTGCGCATATGCATCATTCTGGTGCACAGTTTGATTCCTATACCTTTAGTATTGCCTTAAAGGTCTGCATCTATTTTCATAACTCGAGATTGACATCTCAAGTGCATGGATTGGTCATCACTGGTGGCTACGAGTTAGATTATGTTGTTGGAAGCATTCTTATTGATCTATATGCAAAACAGGGCAATATTAACAATTCTTTAAGATTGTTTGAAAGGTTGCCTGATAAAGATGCTGTGGCTTGGTCTAGTTTGATTTCTGGTTGTTCTAGATTTGGTTTAGGTACATTAGCTTTTTCCCTCTTTATGGATATGGTTCACTTGGATCTCGAGATTGATCATTTTGTCCTTTCAATCATTCTGAAAGTTTCTTCAAGAATGTTCTGTGACTGGAACCTGAACTGTGAAAGACAGAATGTTTTGGTGACTGTATCAGTTGAATTAGAAGGTAAAAGTGCCTATGGGTCAAATTGGACATCTAGATGGAAGATACTACACCAAAGAATTCAAGTACCATGGATGCAGCAATTCAATCCGATCGGTTTCTATCCTTGCTATTATTGCCATGAGGTTTCATAG 1026 0.3947 MVVDATIGIDDLGELNSGTKQIERLRFNNLLIIIGRNHCIPHALQFVSKMHGKGLKLDAFTFPCALKACSLLGQLTLGRQLHCCIIKSGFDCSCYCLSALIDMYSNFKLLDEAMKIFYKNSHLAESLTLRNSMLSGYVTNEDYAKALSLVAHMHHSGAQFDSYTFSIALKVCIYFHNSRLTSQVHGLVITGGYELDYVVGSILIDLYAKQGNINNSLRLFERLPDKDAVAWSSLISGCSRFGLGTLAFSLFMDMVHLDLEIDHFVLSIILKVSSRMFCDWNLNCERQNVLVTVSVELEGKSAYGSNWTSRWKILHQRIQVPWMQQFNPIGFYPCYYCHEVS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02974 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Pste2g02974 341 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 180 279 - -
Pste2g02974 341 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 276 IPR046960 GO:0003723|GO:0009451
Pste2g02974 341 Gene3D Tetratricopeptide repeat domain 24 182 IPR011990 GO:0005515
Pste2g02974 341 Pfam PPR repeat family 131 172 IPR002885 -
Pste2g02974 341 Gene3D Tetratricopeptide repeat domain 183 279 IPR011990 GO:0005515
Pste2g02974 341 Pfam PPR repeat 97 118 IPR002885 -
Pste2g02974 341 Pfam PPR repeat 201 225 IPR002885 -
Pste2g02974 341 Pfam PPR repeat 229 256 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02974 Pste-Chr2 29659262 29662430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02974 43 276 Glycoside Hydrolase AT3G49170 23.750 8.86e-15 73.6