Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02942 ATGGCGCAAACGCTGGCAATGGCCGTGGCACCCTCACTCGCTATCATTTCCAATTCCCGCCTCTCCAACACAGTCTCAGTGCCCGTTCTCAACACGAAGGTTCGGGGCTTAAGCATAAAGTGCGTCCGTGTTGGGAATGTGGAGATTCCGAACAACAAGCGAATCGAGTACTCGCTGCAGTACATTCATGGAGTTGGGAGGAGCAGAGCGAGACAGATCCTGTGTGATATCAATGTGGATAACAAAATCACCAAAGACCTCACTGAGGAGGAGCTCATCACTCTCAGGGATGAAGTTTCCAAATACATGATTGAAGGGGACCTGAGACGGTTCAATGCGATTAATATAAAGAGACTGAAGGACATTCAGTGTTACAGAGGAATAAGGCATATTCAAGGGCTTCCTTGCAGAGGCCAGCGAACCAAGAACAATTGCCGGACCTTGAAGGGTAAGAAGGTCACCATTGCTGGCAAGAAGAAAAAGTAAATATCTTTTATTTTTTTGTGATCATGTTTTCTAATTGTCAATCTTGTAAGAAAAAAAATATGAATATTTACTACAATTTATTTGTTTTCATTAAATGTAATTTTTTGGATGTGGAAGCTTAACTAATGTTTCTTGGAAATTTATCCTGCATGAATCACTCACTGCTTGGTCATGTTATTAGTTCTGGGCAGACAGACTTGGATAATGTACAAATATTAGATTGGAGATATTAGAACTGGGTGGTGTTGGGTTTAATGAATTGCTTAGATCCTACTTCCTAGTTTTTTACAGCATGTTGGATTAGTTCTGCAGTG 800 0.4125 MAQTLAMAVAPSLAIISNSRLSNTVSVPVLNTKVRGLSIKCVRVGNVEIPNNKRIEYSLQYIHGVGRSRARQILCDINVDNKITKDLTEEELITLRDEVSKYMIEGDLRRFNAINIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVTIAGKKKK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02942 161 Gene3D - 42 110 - -
Pste2g02942 161 FunFam 30S ribosomal protein S13 111 160 - -
Pste2g02942 161 FunFam 30S ribosomal protein S13 41 110 - -
Pste2g02942 161 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 37 159 - -
Pste2g02942 161 ProSiteProfiles Ribosomal protein S13 family profile. 44 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste2g02942 161 Pfam Ribosomal protein S13/S18 43 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste2g02942 161 Gene3D 30s ribosomal protein s13, domain 2 111 161 IPR027437 -
Pste2g02942 161 Hamap 30S ribosomal protein S13 [rpsM]. 41 157 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste2g02942 161 NCBIfam 30S ribosomal protein S13 43 152 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste2g02942 161 ProSitePatterns Ribosomal protein S13 signature. 126 139 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste2g02942 161 SUPERFAMILY S13-like H2TH domain 42 153 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02942 Pste-Chr2 29393684 29394660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02942 42 159 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.282 5.77e-07 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02942 2 29393684 29394660 Pste2g02942 2 29393684 29394660 ECH