Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02933 ATTTGTTGAATATTTTTGTGGAATGCACAAGTTGGTGTCTCTGGTCCGGTTAGGGCATTTGGCGCAGGATGCAAACGAAACTGGGGACCTTAAATCGCCAATTTCTTACCTTTCCAGTCCCAATCAATTCATGTTCCCCCAATTCCAATTAAGCTACAAGTGTTTCTGATCTACAAGTTATGGGTGCTCCGAAGCAGAAATGGACTTCAGAAGAGGAAGCAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAAGATCCAGAGTTTAGTAGTGTCTTATTCCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTAGCAGTCAGAAGGGTGCATCATGCCCCAAAACAGGATGAGAACTCTATGGCTATCACTCCTGTTGCCCCAAGTGACGAAGAAATTGTTGATGTTAAGCCTCTTCAAATTTCTAGAGATATGGTGCAGATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAACTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTCATAGAGGACCAATATTGGGCACTGCCAGGCTTGAAAAGGATGTTGTCTGCAAAGTTGAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTGTATATTTCTACGTTTAATTATGTCAGGGCTCATATGCTTCGGATGCAAACACGTGACAAAATTTTGGTGTATTTACTTTCACTTTTGATGAATGTTCTCAAGGGATGGATGCAAAATGAGTCTCTGGTTCACGCTTTAGAGGAGATGCATGAAAGTAAATAAGTAGAGATGTAAATCGCAAGTATAGGATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATATTATTTTTGGATGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAGCATCCTTACTAAATCTCAGATAGACTTAGAGTTAGCAAAGATAAGGTCCATGACCCCACAAGAGGCAGCTGCATATGCTGCTCGGGCAGTTGCTGAAGCGGAAGCTGCCATAGCAGAAGCAGAGGAGGCAGCCAAAGAGGCTGAGGCAGCAGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTACAACAAAATCCGGGAAAGGGAGAAAATCCCCCAAGAGGATCCATACTTGATGGAGGTTTGAAGAATTAGATATGAGGAGAGATGAACCGTGGGATTGATTAGACAGCCAGCCAGATTCATCTTGTGACTATTCAGGTTTCACCTTTATTAGATTATTCTGAATTTTTGTATCTTGAAATACCCTTCTTGTAGATAGAAACATTGTTTGAATCTTTTTTGTAATTTCCTTAGAGCTGTTGTTACCTTAGCGCTCTGTCCATGTACCCAGTTATAGAAAATAGAATGTTTAGATGAATGGGAATTTGTCCAAATTTATGCTGAAGCATACAACAATATCATTTTTTCCTTCTTACTAAAAAAAA 1564 0.4105 MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSSVLFLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHHAPKQDENSMAITPVAPSDEEIVDVKPLQISRDMVQIPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKRMLSAKLKFLTASGKLIKVYISTFNYVRAHMLRMQTRDKILVYLLSLLMNVLKGWMQNESLVHALEEMHESK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02933 233 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pste2g02933 233 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste2g02933 233 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Pste2g02933 233 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pste2g02933 233 Gene3D - 8 85 - -
Pste2g02933 233 Gene3D - 117 189 IPR036388 -
Pste2g02933 233 FunFam Telomere repeat-binding factor 1 2 58 - -
Pste2g02933 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Pste2g02933 233 SUPERFAMILY "Winged helix" DNA-binding domain 118 180 IPR036390 -
Pste2g02933 233 PANTHER SINGLE MYB HISTONE 4 1 189 IPR044597 GO:0003691
Pste2g02933 233 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste2g02933 233 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste2g02933 233 SMART sant 4 59 IPR001005 -
Pste2g02933 233 CDD SANT_TRF 6 56 - -
Pste2g02933 233 FunFam Telomere repeat-binding factor 1 8 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02933 Pste-Chr2 29292199 29297935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02933 1 180 Single Myb Histone (SMH) Gene Family AT1G49950 69.061 4.90e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste2g02933 Linker_histone 1.8e-07 CL0123