LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02927	ATGGATCGCAAGAACCCCCGGAGGAAGCCTAAACTCGAGCGCCGCAACGCCCTCAAGTACTCCGAATACGACGCCGGATCGTCCAACTCTTCGGGGGACGACACGCTCTACACGCGCTCCATGGAGTTCTACGATCGCACCAGCTTCCGAATCGAGGGAGTCGAGGGCGAATTCGATCGAATTTGCCGCAGTTTGGGCCTCTCAGGCCCAGAGGACTTTGCGATTCCCGCAGCGGCATGGGAAGCCATGAAGTTCCGTTCTTCTTCCGATATTCTCCCCAGACTCAAGCTCAACAACCTCGATATTCCCGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAATCGAAGGGATAGAGTTAGGGAGATAGACGATTCGAGCACTGGTATTAAGGGGGTTCGGCCGCCGATGTTGAAGCCACCGCCGGGGGCGAGGGTTCAGGTGGTGGATGATAGCGAGTGTTCCACGTGGGACCTTTTGAGGGATTTGGCTCCGCAAGGTGAAGGATTACCATCGAACCATTCTGAGCATAAGAGGGAGGTAGAGAGGGAAGTAGAGAGAGAAGTAGAGGAGAAGGAAAAAAGGGAAGTTGGAAGAAAAGAGAGTCCGAAGAGGGAAGGGGAAGAGAATGTGGATAATGCGGCGAGGATTGCGGAGATCGTGGCTGGGCTTTCAGAATCGTGTTCGTTTTCCACGTCCAACGAAGATGATTCTTCTAGCAGTACCACGGAACCTACTTCCAATAATATTTCTCCGCAAGGGAGAATTAAGCGTACTATTACCGCCGGAAGCTGGCAGAAGGGTGAGTTTCTCGGGGGTGGCTCCTTTGGCGCCGTTTATGAAGGAATCTCTGATAATGGATTCTTTTTCGCTGTAAAAGAAGTTTCACTGCTTGATCAGGGGACTCAAGGAAAACAAAGTGTATATCAACTAGAGCAGGAAATATCACTTTTGAGTCAGTTTGAGCATGATAATATTGTTCAATACTATGGCACAGAAATGGATGAGTCAAAGCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCTCTTAGAAGCCTCTATCAGAAATATACTCTTCGTGATTCCCAAGTATCTGCCTATACAAGACAAATTCTGCATGGTTTGAAGTATCTTCATGATCGAAATGTGGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCGAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCGAAGGCAACCAAGTTGAATGACGTTAAATCAATGAAAGGGACGGCATTCTGGATGGCCCCTGAGGTTGTAAAAGGGAAGAACAAGGGTTATGGGCTACCAGCTGATATGTGGAGTCTGGGATGCACTGTACTGGAGATGTTAACAGGCAAACTTCCGTACTGTGAATTGGAATGTGTACGTATCATATTAATTATTATTGCTATTAAACTCCCAATACCGTTGGCTGCTCATAGTAAGGGTGATCGTATGCAGGCATTATTTAGAATTGGAAAAGGTGTGCGACCTGATATACCTGACTCTCTTTCAAGAGATGCACAGGATTTTATCCATCAGTGCCTTCAAGTTAATCCAAACGATCGTCCCACTGCTGCTCAACTTTTAAGCCATTCATTTGTCCAAAGGCCACTTTCCCAGTCCTCTGGTTCTTCATTTCCGCATATTCACGGCCGGAAGGGTTAAACTATATCATCTTCAACTATGAAACGTTATGGAGTTCTGTCCATTGCATGTAACATTTCGAGTGTTCGGTCTTGAAGTTGCTGGGGTTCATCTAGGGTCCATTACTGATGAAATTGCTGATTAGCTCGTGCTGTAGAATTCAGAGTTTGCTTGCTTGTAACTTATGTAAAATTTTCAGCACGGCTTTGAATCTAGCATGTCATATAGCAATCCAGAGAATCACGTTATCGAATTGGTAATATCCTATTGGAGAATTATGCTCAATATGTGTTATCTAATGACTCTGATGATTTTTCCGCTGTAGCAAAGGTGTATCATCGGCCAGCTGAAAAAGTTACCCCACGCACCTTCCCTCAAATTAGCTGACCAGCAGAAAACCTATAGGGCTTAAATGAGCAATAGTAGCAAGAATTACAGACTATTCTATTTGTATATATTATTTTTTTATTATTATTAGCATGGCATTGTTTGTGTACATCTATATTTGGTAGCTTTCTTTCTTTTGTTCAATCTGTTGTGTGTAATAATGTTTTCCACTTTTTGAATGGCATCTCTGAAAATTTAGTTTTTGGGCGAATGCAATAACAAATGCTTTAGACTTTAGATCCAAC	2306	0.4423	MDRKNPRRKPKLERRNALKYSEYDAGSSNSSGDDTLYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFAIPAAAWEAMKFRSSSDILPRLKLNNLDIPEEEEEEEEEKKKKNRRDRVREIDDSSTGIKGVRPPMLKPPPGARVQVVDDSECSTWDLLRDLAPQGEGLPSNHSEHKREVEREVEREVEEKEKREVGRKESPKREGEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTEPTSNNISPQGRIKRTITAGSWQKGEFLGGGSFGAVYEGISDNGFFFAVKEVSLLDQGTQGKQSVYQLEQEISLLSQFEHDNIVQYYGTEMDESKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSMKGTAFWMAPEVVKGKNKGYGLPADMWSLGCTVLEMLTGKLPYCELECVRIILIIIAIKLPIPLAAHSKGDRMQALFRIGKGVRPDIPDSLSRDAQDFIHQCLQVNPNDRPTAAQLLSHSFVQRPLSQSSGSSFPHIHGRKG	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g02927	564	FunFam	Protein kinase, putative	261	473	-	-
	Pste2g02927	564	Gene3D	Phosphorylase Kinase; domain 1	247	348	-	-
	Pste2g02927	564	SUPERFAMILY	Protein kinase-like (PK-like)	244	548	IPR011009	-
	Pste2g02927	564	Coils	Coil	105	125	-	-
	Pste2g02927	564	Pfam	Protein kinase domain	268	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02927	564	MobiDBLite	consensus disorder prediction	229	256	-	-
	Pste2g02927	564	ProSitePatterns	Protein kinases ATP-binding region signature.	273	295	IPR017441	GO:0005524
	Pste2g02927	564	MobiDBLite	consensus disorder prediction	109	130	-	-
	Pste2g02927	564	MobiDBLite	consensus disorder prediction	166	215	-	-
	Pste2g02927	564	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	110	552	-	-
	Pste2g02927	564	MobiDBLite	consensus disorder prediction	174	215	-	-
	Pste2g02927	564	SMART	serkin_6	267	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02927	564	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	386	398	IPR008271	GO:0004672\|GO:0006468
	Pste2g02927	564	MobiDBLite	consensus disorder prediction	102	147	-	-
	Pste2g02927	564	Gene3D	Transferase(Phosphotransferase) domain 1	351	559	-	-
	Pste2g02927	564	ProSiteProfiles	Protein kinase domain profile.	267	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02927	564	Coils	Coil	177	197	-	-
	Pste2g02927	564	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02927	Pste-Chr2	29261172	29268159	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g02927	132	548	MAP Kinase Kinase Kinase	AT4G08500	53.938	1.01e-135	406

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pste2g02927		Pkinase	6e-68	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g02927	2	29261172	29268159	Pste2g02927	2	29261172	29268159	ECH
	Pste8g01902	8	14097176	14109143	Pste2g02927	2	29261172	29268159	PCT