Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02907 CAAGATAAAAACCACCACTCTCGTACGATTGCGTTGCTTCTATGTTACAAAACCCTAACCAAACCCTTAGCATTCTCTCTCGTCACTCCTGAGTCAGCAATGCCTCGCCAACCACCGCCCTCTCCGCCGTCGCGCCCCGGCATTCTCGACCCCAAAATCTGGCGAGCCTGCGCCGGAGGCACCGTCGAAATCCCCACTCTCAATTCTAGGGTTTACTACTTCCCCCAGGGACACTTTGATCAAGCTTCTTCCCCTCCGCGAAACCTCTCCCCTGAACTTCTCGCCAAACCTTTTATTCTCTGCACCGTCGCCTCTGTTCAATTCCTCGCCGATCCTCTCACCGACGAGGTTTTCGCCAAGCTGATTCTCCACCCCATCGCTAATGCCGCGGGGCCACTACCTTCTGTCCCCTCTCCTCCTCCTCCTCCTCAAAACGACGACAACAAGGTCGTTACGTTCTCCAAGATTCTCACGGCGTCTGATGCCAATAACGGCGGGGGGTTTTCCGTTCCAAGATACTGCGCCGACTCCGTCTTTCCGCCGCTCAACTTCCAGGCCGACCCGCCGGTGCAGAACCTCTTCGTCACCGACGTCCACGGCTTCGTCTGGGAGTTCCGCCACATCTACCGCGGCACGCCGCGCCGCCATCTGCTCACCACCGGCTGGAGCACCTTCGTCAACAACAAGAAGCTCGTTGCCGGGGACTCCGTCGTGTTCATGAAGAACTCAAACGGCGGCTTGTTCGTCGGAATTCGGCGCGCCACGCGCTTCGCTCCGGTGAGGAACAGGGTGGAGGAGAAGGAAGAGGAGGAGGAGGAGGACGAGGAAGCCAGGGAGGTTTTCTCGAGGGACGGGAGGGGGAAACTGTCGGCAAAGGTGGTTGCTGAGGCGGCTGAGTTGGCGGCGCGGAACAAGCCCTTTGATGTTGTTTATTACCCCAAGACTGGTTGGTCGGAGTTTGTGGTTAAAACTGAAGCAGTGGATGAAGCAATGAGCGTCGCCTGGAGCCCTAGGATCAAAGTGAAAATGGCTATGGACTCTGAGGATTCCTCCAGGTTGTCCTGGCATCAGGGAGAGGTCTCTGCCGTCTCTCTTCACGGTAATGGTCTGTGGCGCGGTTCTCCCTGGCGCATGCTTCAGATTACGTGGGATGAAACAAACGACCCTTACTTGCAGAATGTAAAGTGGGTCAACCCTTGGCAGGTGGAACTTGTTTCCACCACACCTGCACTTCATTCAGCATTCACCCCAACCCCAACCCCAACCGCAACAAAAAAGTGTAGAACTGCTCTTGGTTCTGGGGTGTTTACAAATGGAGAGAGAGATCCCTATTCTGTGACAAGGTTTTCAACAATGGGACAACTGAATCAGACATTGTTGAGTTATCGTAGTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAATTTTACCAATTATCCAAGTGATATGTCTCATCTATTTATGGGCAGTTCCTTTGGGAACAATACATTTCCTAAGATGAAGGTTTTGTCAACAGAGCTAAATGTTGGCAGTCCTCCTCAATCTGATGAATTTTCACTTGATAGCCGTGGCAGTCTCCATTCCAGTGGTACAGACCTCGCTGGGAATCACAACTGCAAAAAAAGAAAACTTGTGTCTGTTTCATTTCAGCTATTTGGTGCAGTCATACAGACTGAACAGCATGTTGAAAATGGTTTGCAAGGTACTGGTTGCACTTGCACAGGAAGTGAATGCCAAAGAGCTTCGACAGACGATGATTCTTACTTGTGAAAGTAGCTGTGTCTATGTCATGCATATAAGTAGCTGTACAGAACATCTTTGGGGAGGATAAAAGGTGCAGCTTCTTTCGATTGGCTAAAAAGGAGAATTTGTAACTGTTGCCCGTCAGGTGGGTACTTCATACAGGCTGCAAGCTGACCATCCTTTGGACCCTTTAGTGTGCCCGTTGTCATTGGTTTCAATCTTACTGTAGTTGAAACTTGGAGCGGAGCTAAACCAACTCCGTAATATTTGCACAAAAAACTTATGTTAATATCTGAC 2058 0.5102 MPRQPPPSPPSRPGILDPKIWRACAGGTVEIPTLNSRVYYFPQGHFDQASSPPRNLSPELLAKPFILCTVASVQFLADPLTDEVFAKLILHPIANAAGPLPSVPSPPPPPQNDDNKVVTFSKILTASDANNGGGFSVPRYCADSVFPPLNFQADPPVQNLFVTDVHGFVWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVVFMKNSNGGLFVGIRRATRFAPVRNRVEEKEEEEEEDEEAREVFSRDGRGKLSAKVVAEAAELAARNKPFDVVYYPKTGWSEFVVKTEAVDEAMSVAWSPRIKVKMAMDSEDSSRLSWHQGEVSAVSLHGNGLWRGSPWRMLQITWDETNDPYLQNVKWVNPWQVELVSTTPALHSAFTPTPTPTATKKCRTALGSGVFTNGERDPYSVTRFSTMGQLNQTLLSYRSFPAGMQGARHDVFSASNFTNYPSDMSHLFMGSSFGNNTFPKMKVLSTELNVGSPPQSDEFSLDSRGSLHSSGTDLAGNHNCKKRKLVSVSFQLFGAVIQTEQHVENGLQGTGCTCTGSECQRASTDDDSYL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02907 562 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Pste2g02907 562 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
Pste2g02907 562 CDD B3_DNA 120 220 IPR003340 GO:0003677
Pste2g02907 562 Gene3D - 117 222 IPR015300 -
Pste2g02907 562 FunFam Auxin response factor 118 222 - -
Pste2g02907 562 SMART B3_2 120 222 IPR003340 GO:0003677
Pste2g02907 562 Pfam Auxin response factor 264 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste2g02907 562 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Pste2g02907 562 Gene3D - 302 377 - -
Pste2g02907 562 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste2g02907 562 MobiDBLite consensus disorder prediction 485 506 - -
Pste2g02907 562 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02907 Pste-Chr2 29084699 29089081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02907 16 562 B3 DNA Binding Superfamily AT1G77850 45.997 8.61e-159 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste2g02907 B3 8.1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02907 2 29084699 29089081 Pste2g02907 2 29084699 29089081 ECH
Pste8g01895 8 13980922 13984153 Pste2g02907 2 29084699 29089081 PCT