Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02887 GGCATATAAAAACCCTAAAAGCTCAGAACTCTCAAATAGTTGCAATTGTATTGCTTCCCGTGGTTGAAAAATGGATTCTTCAATTGCGAATGTTGGTGGGTCTGGTGATGAAGGTTCTCACAACTTCAATAGGGGAAGAAGAACATCCTACAAACGTCTTAGTTCTGCTCAAACAAGTAGACTTGAAAGTGGCAATGAAGATTGGCCCCAAGTTCACGTACATCTATGCCAATCTTTTCACTACTTGGTCAACTCTAGAGGATTTGATTGTTTATGGGTTCTTTAGGGATTGTCCGCACCCAGATGAACCCCAACGACTTCAATTAGCATCTGAAGTTGCGCTTGAGCCCAAACAAATAAAATTTTGGTTTCAAAATAAAAGGACCCAAATGAAGAATCAACACGAACGAGCAGATAACACTGCTCTTCGGGTTGAGAATGATAGGATACATAGCGAAAACCTTATTATGAGAGAGGCATTGAAGAATATGCTTTGCCCATCTTGTGGGGGTCCACCATGTCAAGAAGGTGAACATGACCATGTTATCCAAAAAATGCAACTTGAAAATGCTCAGCTAAAAGAAGAGGTAAGTGAACTTTTCTTGATTGACATGCGTATTGGTTTTAAATTTGATGAGAATAATACTTTTAACAACTTGTATAAATTAACATATACATTTATTTATTTATTAATTCATGAGAAGGTGTCAAACCTTCTTGCTAGGTTGATGGAGAAACAAATGTCACCACCGGGGTTGCAACAAACTTATATTCCTATCATAGGGTCAAGTTCACATGCTCCAGGAGGCTCATCACTAAACCAAGAATACAGTGGAAACGTAAGTCATGATCAAAATCTTAATATGCAAATTATGGATGGTGACCATAACTCATTTGGAAGTGAAGGTATAGAAAAAGCACTTATGTCGAAAGTTGTTGTTGCTGCAATGGAGGAATTAGTTAGGCTTCTTCGAATTGATGAGCCTTTTTGGATCAAGTCCTCAACTCAAGATGGGAAACTCATTCTTCAACATGAAAATTATGAAAAAATGTTCCCAAATAACAATCATTTCAAAGGACCCAACGTGCGTGTAGAAGCAACAAAAGATTCGGGAATAGTGAGCATTAATAGCATTCAACTAGTTGACATGTTTTTGGATGCGAGTGTGATGAATTCAAATTTCCAGGACAAATGGGTTAATTTGTTCCCTACAATTATTACAAAAGCAGAAATATTGAAAGTACTTGAAATTGGTATGGTTGGAAATCGAAGTGGAGCTCTACAACTGGTATATATTTTCATGCAAGCACTGCTTTTTATAATTAAGATGTTCGAACAAATGCATGTTCTGTCACCCCTTGTTCAACCTCGGGACTTTCAATTCCTGCGATATTGTCAACAAATTGAGGAAGGTGTTTGGGTGATAGCTGATGTGTCATTTGATTCTTATCGACAGAAAAAATCATTTTTTCACTCTTGGAGGCATCCCTCGGGATGCATGATTCAAGAACTCCCTAATGGATGTTCCATGATTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCAAACACATCAACTATACAAAGACCTTATTGGAACAGGAATTGCATTTGGTGCTGAACGTTGGATCATGGAACTTCAAAGAATTTGCGAGAGATTTTCTTGCTTTTATGTTGAAAGGATACCTAATCATGATTGTGATGGAGGTTACACTTTGTCTTATATGTTCACTCAAAACCTTTACACGTATTATTTATATATTTGCATTATGATTTATGTGATCAATACTGTAGAAGGAAGGAGGAGCGTTATGAATTTTTCTCATCGTATGATAAAAAACTTTTGTGAAAGTTTAACCATGTCAGGTAACTTAGACTTCCCACATTTTGATTTGGAGAATAGTGGAGTAAGGGTCTCTATTCGCAAAAACATAAACCCGGGTCAACCAAAGGGCATGATTATTGCGGTTGCTACCACCATTTGGCTTCCTCTCCATTATATGAAAGTTTTTGAGTTCTTCACAGATGATAGAAGACGACTTCAGTGGGATGTTCTTTGTTGTGGGAATCACGCCAATAAGATTGCACAAATCTCAAATGGAATTCATCCTAGCAATTGCATATCTATTTTTCGGCCATTCATCCCTAAGGAGAACAATGCATTGATTCTTCAAGAAAGTTTTACGAATCCCATGGGATCATACATTGTGTATGCTCCTACTGATGTAGCAACTATGAATTCAGCCATAAATGGAGAAAACACTTCAATGTTGTCCGTTCTTCCATCAGGATTTGTCATATCTGCAGATGGAGAACCAAATGCAACTTTAGGAGCATTTAATAGTTCAGATATTGGAAAATTGGGAGGCTCATTACTGACAGTGGCTTTCCAGATACTTGTTTCAAGTCCAGATGGAATTAATATGCCAGATATGGACTCTGTGGCAGCTGTAAACACCCTTTTAACCTCAACAGTCCTCAAAGTCAAGGATGCTTTGAATTGCAACAATATG 2519 0.3759 MLVGLVMKVLTTSIGEEEHPTNVLVLLKQVDLKVAMKIGPKFTYIYANLFTTWSTLEDLIVYGFFRDCPHPDEPQRLQLASEVALEPKQIKFWFQNKRTQMKNQHERADNTALRVENDRIHSENLIMREALKNMLCPSCGGPPCQEGEHDHVIQKMQLENAQLKEEVSELFLIDMRIGFKFDENNTFNNLYKLTYTFIYLLIHEKVSNLLARLMEKQMSPPGLQQTYIPIIGSSSHAPGGSSLNQEYSGNVSHDQNLNMQIMDGDHNSFGSEGIEKALMSKVVVAAMEELVRLLRIDEPFWIKSSTQDGKLILQHENYEKMFPNNNHFKGPNVRVEATKDSGIVSINSIQLVDMFLDASVMNSNFQDKWVNLFPTIITKAEILKVLEIGMVGNRSGALQLVYIFMQALLFIIKMFEQMHVLSPLVQPRDFQFLRYCQQIEEGVWVIADVSFDSYRQKKSFFHSWRHPSGCMIQELPNGCSMITWVEHVEVDDKIQTHQLYKDLIGTGIAFGAERWIMELQRICERFSCFYVERIPNHDCDGGYTLSYMFTQNLYTYYLYICIMIYVINTVEGRRSVMNFSHRMIKNFCESLTMSGNLDFPHFDLENSGVRVSIRKNINPGQPKGMIIAVATTIWLPLHYMKVFEFFTDDRRRLQWDVLCCGNHANKIAQISNGIHPSNCISIFRPFIPKENNALILQESFTNPMGSYIVYAPTDVATMNSAINGENTSMLSVLPSGFVISADGEPNATLGAFNSSDIGKLGGSLLTVAFQILVSSPDGINMPDMDSVAAVNTLLTSTVLKVKDALNCNNM 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02887 810 CDD homeodomain 64 105 IPR001356 GO:0003677
Pste2g02887 810 Gene3D - 50 118 - -
Pste2g02887 810 Coils Coil 153 173 - -
Pste2g02887 810 Pfam Homeodomain 64 103 IPR001356 GO:0003677
Pste2g02887 810 SUPERFAMILY Bet v1-like 571 771 - -
Pste2g02887 810 SUPERFAMILY Bet v1-like 275 526 - -
Pste2g02887 810 ProSiteProfiles START domain profile. 272 528 IPR002913 GO:0008289
Pste2g02887 810 SMART START_1 281 525 IPR002913 GO:0008289
Pste2g02887 810 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Pste2g02887 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 806 IPR042160 -
Pste2g02887 810 SMART HOX_1 47 108 IPR001356 GO:0003677
Pste2g02887 810 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Pste2g02887 810 CDD START_ArGLABRA2_like 276 524 - -
Pste2g02887 810 Gene3D - 280 504 IPR023393 -
Pste2g02887 810 ProSiteProfiles 'Homeobox' domain profile. 65 104 IPR001356 GO:0003677
Pste2g02887 810 Pfam START domain 284 525 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02887 Pste-Chr2 28921318 28930300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02887 65 806 Homeobox Transcription Factor Family AT1G73360 40.658 6.55e-178 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste2g02887 START 7.3e-31 CL0209