LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02884	AAGTTCAAGGAGTGCCCACATCTAGATAAAAGCCAAAGACTTGAAATTGCTAAAGATCTAGGGCTTGAACCAAAACAAGTTAAATATTGGTTTCAAAATAAGAGGACTCAAACAAAGCATCAAACTGAGCGCGCAAATAACAATACCCTTCGTGTTGAGAATGAAAGAATGCAGAATGAAAACCTGGTACTGAAAGAGTCATTGAAGAATATAATTTGTCCATCTTGTGGGGGTCCACGTAATAGCGATGAAAGGAGTGAACTTTCTCTAGCACAACTTCGTCTTGAAAATGCTCGCCTAAAAGCAGAGCGTGAGAAGGTGTCTAATCTTCTTGTACAGTACATGGAGAAATTACCAGTGTCAGAACTAAACATTGAGTCAATTCCTATAGGAGGATCTTCATCATGTGGTCCATTATTGGGAAGTTCTCTAAAGCAAGTCACTGGTTCAACAAGTCGTTCATTTCAAGATGAAGATACCATGTCCACCCCAATGACCCTAGGGAGCAAAATAACACAAATGGAAAAAGCAATTATGTCAAAGACTGCAATGGCTGCTAAGGAAGAATTACTCAAGCTTTTGTGCACCAATGAGCCCTTATGGGTCAAGTCTACAATTAATCAGAGATATGTTCTTCATCTTGAATGCTATGAAAGGTTCTTTCCAAGGACTAACCACTTCAAGAATTCCAAAGCGCGTGTAGAATCATCGAAAGCTTCACAAATTGTGAGAATTAAGGCGGTGGAATTAGTTGGCATGCTTTTGAATTCGGAAAACTGGGCAAATCTTTTCTCAACAATTGTTACAAAAGCGCGCACAATCGAAATACTTGAAAATGGTTCATTAGAAAATAGAAGTGGAGCTTTGTTGTTGATGTGTGAAGAGATGCATGTTCTTTCACCTTTAGTGCAACCTCGGGAATTCTACTTCATTCGCTATTGTTACCAAGTTGAAGCAAAAGTATGGGTGATAACAGATGTTTCAGTTGACTGCAAGAGAAAAAACAACCATGATACTAATTGTTGGAGGTTTCCCTCAGGATGCATGATTCAAGAAATTTCTAATGGGATGTGCCAATCTGGATTGGAAGTACGTGTGTGGGTTTCTTGGGTTGAACATGTTGAATTGGATGAAAAATTCCAAACACATCAATTGTATAGAGAACTTGTTAACAACAATTTTGCATATGGAGCCGAAAGATGGCTATTGGAACTTCAAAGAATGTGTGAAAGATTTACATGTGTCAAGGCTGAACACATACTTAATTATGACGTGGGAGGAGTGATCACTACTCTTGGAGGAAGGATGAGTATGATGAAGCTTTCTCATCAAATGGTTAAAAGCTTCTATGAAAATTTAAGCATGTCAAGTAAGATTGGCTTCTCACAACATGTAGCAGAGGAGAATAGTGGGATTAGAATTTCTACACGAAAAATCACATACCCAAGTCAGCCTAATCCCATGATTATAATCACTTCTACTACCTCTTTTTGGCTTCCCCTCCCTTCTCAAAATGTTTTTGACTTCTTTAGAGATCCAATAAGACGCGCTAAGTGGGATGTTATGTGTTATGAAAGTCCCATGCACGAGATTGCACGCATGTCAATTGGAACTCACTCTAACAACTATATATCGATTATTCAGATTAATCAAATTTTTATTTTTATCGTTACTGTTTCTAATGCGAACTTGATTAAACTTACTTTGATCATGCATGTGAAGCAGCCTATCCACCCAACTACGAGTAATATGGTAATTATTCAAGAAAGTTGTATTGATCCTATGGGATCATATGTGGTATATTCTCCTGTCAATATACTTGACATAAAAAGGACTGTAAATGGTCAAGATTCATCAGCATTCACAATCTTTCCATCAGGCATTGTCATCTCAGAGGATGGAAAATCTATAGCAAATGCTTGTGCATCCAGTAGTGGAAAAGGAGATGTAAGGACAAGAGGTTCATTATTGACTGTAGCTTTCCAAATACTGATGAGTAGTCCAACAACCATGACGATGGAATGTGTGACTGTTGCTAACTCTGTCATCACTTCAACTATCAAAAACATATATGATTCTTTGATGACTAGTTCCAATTTGGAGCTT	2106	0.378	KFKECPHLDKSQRLEIAKDLGLEPKQVKYWFQNKRTQTKHQTERANNNTLRVENERMQNENLVLKESLKNIICPSCGGPRNSDERSELSLAQLRLENARLKAEREKVSNLLVQYMEKLPVSELNIESIPIGGSSSCGPLLGSSLKQVTGSTSRSFQDEDTMSTPMTLGSKITQMEKAIMSKTAMAAKEELLKLLCTNEPLWVKSTINQRYVLHLECYERFFPRTNHFKNSKARVESSKASQIVRIKAVELVGMLLNSENWANLFSTIVTKARTIEILENGSLENRSGALLLMCEEMHVLSPLVQPREFYFIRYCYQVEAKVWVITDVSVDCKRKNNHDTNCWRFPSGCMIQEISNGMCQSGLEVRVWVSWVEHVELDEKFQTHQLYRELVNNNFAYGAERWLLELQRMCERFTCVKAEHILNYDVGGVITTLGGRMSMMKLSHQMVKSFYENLSMSSKIGFSQHVAEENSGIRISTRKITYPSQPNPMIIITSTTSFWLPLPSQNVFDFFRDPIRRAKWDVMCYESPMHEIARMSIGTHSNNYISIIQINQIFIFIVTVSNANLIKLTLIMHVKQPIHPTTSNMVIIQESCIDPMGSYVVYSPVNILDIKRTVNGQDSSAFTIFPSGIVISEDGKSIANACASSSGKGDVRTRGSLLTVAFQILMSSPTTMTMECVTVANSVITSTIKNIYDSLMTSSNLEL	702

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g02884	702	Gene3D	-	183	455	IPR023393	-
	Pste2g02884	702	Pfam	START domain	184	411	IPR002913	GO:0008289
	Pste2g02884	702	Coils	Coil	40	67	-	-
	Pste2g02884	702	ProSiteProfiles	START domain profile.	172	414	IPR002913	GO:0008289
	Pste2g02884	702	SUPERFAMILY	Homeodomain-like	2	44	IPR009057	-
	Pste2g02884	702	Coils	Coil	83	117	-	-
	Pste2g02884	702	SUPERFAMILY	Bet v1-like	173	412	-	-
	Pste2g02884	702	CDD	START_ArGLABRA2_like	176	410	-	-
	Pste2g02884	702	SUPERFAMILY	Bet v1-like	435	666	-	-
	Pste2g02884	702	CDD	homeodomain	2	41	IPR001356	GO:0003677

Showing 1 to 10 of 16 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02884	Pste-Chr2	28901018	28906666	Proximal

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g02884	2	694	Homeobox Transcription Factor Family	AT1G73360	38.928	1.35e-155	466

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Pste2g02884		START	2e-28	CL0209

Showing 1 to 1 of 1 entries