Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02859 AAGTATGTAAGTACAATACTCTTGAATTTTATTAACATTATGTTTTCTGCTTCCAGATTTGGACACTGTATTGCATGTAAACAGGAAATCATGACTTCTTCTCATGACCTAACAGATACTGAAGCTGATGGGCAGGAACAGTCGAAATCACAAATGCAGCCTTTATCAGCAAATGGAATTTCTCATGCTGGTATTGGTGCTCAGAATGTTCAGTATGCAACACCTCCACAGCTTGGAACTGTGAATACTGTGGCACCACCCGCTTATCCATATCCAGATCCGTACTACCGAAGCATCTTCGCTCCGTATGATGCTCAACCGTATACCCCACAACCCTATGGTGGAAACCCAATGGTCCACCTTCAATTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAAGAAAACTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCACTAAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCGAAGAAAAATGAGAATCAACAGGATGAGATTGCATCAACTGACGAATCACAGTCCAATATCAATCTCAATACTGATAAAAATGAGCTTACGCCGGATAGAACATCGTAAAAATACAGACATGGTGATACTGTAGAATGCAGAGATCTGTTGTGTATAAACTATGTTGGGAGATTAATCTCCAACCAACAACATCTTCCTATCGTTCAGTCTATATATCCCAATGTGTACTTTCTAGCCTTTGTAGGTGAGATTGTCATTGTGTGGGCTCTTCTTTGTATTATTTTGTGCCTAGGAAGGTGAAGAGATTATTCGAAGGCATGATCATGTTTATTTAGCTTGTTAAGAGACCTGAGCTGTTGTTGTATCTATTTTGATTTGTTGTTATAAAAGTAAAACAGGGTAAGTTCAAGAAGTTTACATCCAGGATCAAGAAGATCGAG 1034 0.3975 MFSASRFGHCIACKQEIMTSSHDLTDTEADGQEQSKSQMQPLSANGISHAGIGAQNVQYATPPQLGTVNTVAPPAYPYPDPYYRSIFAPYDAQPYTPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKTARNRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQDEIASTDESQSNINLNTDKNELTPDRTS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02859 220 MobiDBLite consensus disorder prediction 31 46 - -
Pste2g02859 220 MobiDBLite consensus disorder prediction 184 214 - -
Pste2g02859 220 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 127 182 IPR001289 GO:0003700|GO:0006355
Pste2g02859 220 PRINTS CCAAT-binding transcription factor subunit B signature 159 182 IPR001289 GO:0003700|GO:0006355
Pste2g02859 220 PRINTS CCAAT-binding transcription factor subunit B signature 128 150 IPR001289 GO:0003700|GO:0006355
Pste2g02859 220 Gene3D - 125 186 - -
Pste2g02859 220 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 27 212 IPR001289 GO:0003700|GO:0006355
Pste2g02859 220 MobiDBLite consensus disorder prediction 141 163 - -
Pste2g02859 220 SMART cbf3 124 185 IPR001289 GO:0003700|GO:0006355
Pste2g02859 220 ProSitePatterns NF-YA/HAP2 subunit signature. 130 150 IPR018362 GO:0003677|GO:0016602
Pste2g02859 220 MobiDBLite consensus disorder prediction 24 46 - -
Pste2g02859 220 MobiDBLite consensus disorder prediction 176 220 - -
Pste2g02859 220 MobiDBLite consensus disorder prediction 143 159 - -
Pste2g02859 220 ProSiteProfiles NF-YA/HAP2 family profile. 125 185 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02859 Pste-Chr2 28666932 28673430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02859 18 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.812 9.57e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste2g02859 CBFB_NFYA 4.9e-26 No_clan