Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02824 GTAGAATTGATGAAGGAAGGTAGTGGCAGGAAGCAGGGTGCAGCCCCACCCTGTGCTGCATGCAAGCTTCTCAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTCCCAGCAGATGAACCTCAAAAGTTTGCAAATGTACACAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGCAGCATGGTGTACGAGGCCAATGCGAGAGTCCGAGACCCCGTTTATGGGTGTGTTGGGGCCATCTCTTCGCTTCAACAACATATTGATGTCCTACAAACCCAATTGGCACTGGCCCAGGCTGAGGTGGCCCACCTTCGGGTACGACAAAGCAGATGCTTTTCCAGTCATGGGCTTAGGCCCAATAGTCCAACCAATAGTGAGTTTCCTTCATCCAAGCCTGTTTTCGACATGGACATGGACATGGACATGGTGGTGGACCAGGCCAGCTATGGTACTTCAATGTGGTCATGA 516 0.5058 VELMKEGSGRKQGAAPPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQHIDVLQTQLALAQAEVAHLRVRQSRCFSSHGLRPNSPTNSEFPSSKPVFDMDMDMDMVVDQASYGTSMWS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02824 171 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Pste2g02824 171 Coils Coil 96 123 - -
Pste2g02824 171 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Pste2g02824 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02824 Pste-Chr2 28293900 28299324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02824 4 171 AS2 family AT1G31320 79.191 4.82e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste2g02824 LOB 3.7e-43 No_clan