Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02804 GAAACAAGTGCAATTTGGTGATCATGATAGGCAGGGACACTTAGGAGATGGCAAAATCAGAAAAGGAAGTGAGGCGGTTCTGGCATGGATGCGTCACCCGTTGACGTCACTCGCTGCGAAGACCTCTTCGTCTGTAGAGTTCCTTTCTTGGATCGCAGTACTGCCGGAGAAGATGGGAATCTCGAAGCTCTTCCCGGTTGAAGTCGGTATTTGGCTAGAAACTGTTGGATCAGGTGATTTTGAACGAGATTTTTCTCCCACTGGAAGTGACAAAAAGTTGGCCTATGCTTTGATTGTACTTCCCACACGCGACCTTGCTTTGCAGGTTAAGCACATCTTCCACTTCCTTGCATCATCGCTGGGTCTGCACCTTGGCTTGGCTGTTGGTGATCAATATTCGCTTGATGATGGACCAGGGGGAGACAACGGTCTAGACCCGCCTTTGTTTGGCTTTCAAACCAAGGTGGACATATTGGTAGCCACCCCTGTAAGGCTTGTCAACCATGTCAATAATGGCTTCACTTTGAAACATCTTCGTTATCTTGTGGTTGATGAAGCAGATCGATTGCTCCAGGAGGACTACCAGTCTTGTTTACCTACTGTGCTTAAATTGACCCAGTCTAATGATAATGATGGTGGTAATGCTTTTCAATCGGGTAGTGGAGTTGAGAGGGGGTCCAAGCCTCACTCTAGGCTGGCAAAGATAGTTGTATCTGCAACATTAACTCGGGACCCAGGAAGGCTTGCTCAGCTTAATTTGCATCACTCTTTATTTCTGAGCGCTGGGAAAATGCGTTATCGGCTCCCAGAAAATTTGAAATATTACAAACTGATCTGTGAAAGAAAGGTGAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAAAAAAATGCATAGTTTTTACAAGATCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTAAAAAATCAACGGAAAAATGCTACTTTCTGCAGCAAGACACTGGATAAATTTCGGAAGGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATCACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTAATTAATTATGACATGCCCAAATATACAAAGACTTATGTTCATCGAGCTGGTAGGACTGCAAGAGCAGGCCAGACTGGACGTTGCTTCACATTAACGTCACATGATGAGGTTGGAAGATTTAATAAGTTGATGAAAACGGCTAAGGGTAGTTGTCTCGTGCATACTGTTCCATCCAGTTTGATTGAAGCACTTCATAGTACCTACCAATTAGGTGAATATTGTGTAGATCTTCTAAAATTGTTTGATGCCTGCGTAAGGAATGAATATAAAATAATACAGTTATCCTTTGAGAATGTACCTGGGACAACGAGCTTAATGCTTGATTTTCTTTTCCTTTTTGCTGTTCTACATGGAGTGTTTCATAGACTGTCATGCTTTATTCTGTTTTTGATTTACATTAGATTTTTCATTAAGTCTCTGGCATGTTTCATTGTTGGCAGCACTGTCAAAATTGAAGGAGATAATTTTGGAGATCCGGAA 1609 0.422 MRHPLTSLAAKTSSSVEFLSWIAVLPEKMGISKLFPVEVGIWLETVGSGDFERDFSPTGSDKKLAYALIVLPTRDLALQVKHIFHFLASSLGLHLGLAVGDQYSLDDGPGGDNGLDPPLFGFQTKVDILVATPVRLVNHVNNGFTLKHLRYLVVDEADRLLQEDYQSCLPTVLKLTQSNDNDGGNAFQSGSGVERGSKPHSRLAKIVVSATLTRDPGRLAQLNLHHSLFLSAGKMRYRLPENLKYYKLICERKVKPLYLVALLKSLGEKKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSGLKNQRKNATFCSKTLDKFRKGEFQVLVSSDAITRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLTSHDEVGRFNKLMKTAKGSCLVHTVPSSLIEALHSTYQLGEYCVDLLKLFDACVRNEYKIIQLSFENVPGTTSLMLDFLFLFAVLHGVFHRLSCFILFLIYIRFFIKSLACFIVGSTVKIEGDNFGDPE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02804 507 Gene3D - 25 233 IPR027417 -
Pste2g02804 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 258 411 IPR001650 -
Pste2g02804 507 PANTHER RNA HELICASE 57 387 - -
Pste2g02804 507 SMART helicmild6 282 370 IPR001650 -
Pste2g02804 507 Gene3D - 239 411 IPR027417 -
Pste2g02804 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 387 IPR027417 -
Pste2g02804 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 230 IPR014001 -
Pste2g02804 507 Pfam DEAD/DEAH box helicase 62 216 IPR011545 GO:0003676|GO:0005524
Pste2g02804 507 Pfam Helicase conserved C-terminal domain 255 370 IPR001650 -
Pste2g02804 507 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 153 161 IPR000629 -
Pste2g02804 507 CDD SF2_C_DEAD 245 378 - -
Pste2g02804 507 SMART ultradead3 20 246 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02804 Pste-Chr2 28079630 28083500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02804 128 380 Eukaryotic Initiation Factors Gene Family AT5G11170 26.744 1.31e-16 79.3