Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02803 CTGTGTTCTCTCTCTCTCACTCTCACTCTCTGGTTTTTTTATTGACTAGTATTATTATTATTTTGGAGGTGGATTGTCAAATTAATATTAATAATCTGAGTCTGAGCAAAGAAGGGTTGTTAAGCCGCTAAAGTTGTCGTCTTTTAGATTATTAGGGTTTTTATTCTGTTGCAGACAGTGGTTGGGAATCACTGCTCAAAAGAATAATAATACCAAATTCCAACCAGATAAGGAGTGTGGAATTTGGAACCTTCACTTCTTTTCGTTGATACCCTTTTCCTTCTCTCTCTTCTCTTATTCTCATTGTTTAGTTACCTACCGTCGATCAAAGTCAAATGACATCTCTCGCTCCATTTTTTTATTTTATGTCAGTCTTCCCAAAAGGGCTATTCTATTTTGCTGTGAAATTTTGTAATTTTGGCTTGGAGTTGTGAAAAAAATTTGATATTTTAGATCGATTTGTTGATGGGTCATGCTCGGCTGTTGTTAATTGTTGTAATGGCTAATTGAAGTTCTGCAGGTGATTCGTTGGTCAAATGGGGGATCAGGGTGTTTCAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAGGAAGTGTGGAAAGAGACCGAGGAGGCTGTGGTGGAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTGGTCATGGAAAGGTCACCAGGTCTTCCTGTTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGATTCAGTAGTTGACTATTTGGCACTCTTGGATGGTTTGCTGGAAGCTATGCAGAACAAGATCCGCAGGGTTTATGCTTTCACCGATTCTGAATTGTTGCATGATCAGGCGTGTCATGCTTCCCTATTTACGATAACATTTGGGGAAAAATTGGTGATGCCCCTATTGACAGCACTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTCTTTTTAAAGCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGAGATTGTTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAATGCCAATTATGATTACTTTGAAATGTTCGCACACATTCTGTTCACATTGTTTGAAGGCCTACGCTGATGGTAAAGTGCAATCCTGTCAAGTTCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCATATCTACAATTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCGATGGAGAAAGCCCTTTCCGAAGCAAATATTGACCAATCGGATAGAATTTATTGCCCATTTCCAAATTGCTGTGTTCTCCTTGATGCTCATGAATGCTTATCAGCCGGGGCCAGTTCATCTAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGATTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGCTGTGTAGAATTCCAGAACCTGCCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCACCGTCTTGCTCAGAATAAAAGGTGGAAGCGGTGTCAGCAGTGTCGTCGAATGATTGAGCTTACTCAAGGATGTTACCACATGAGATGCTGGTGTGATCATGAGTTCTGTTATTCTTGTGGTGCGGAATACCGAGACGGGCAACAGACATGTCAGTGTGCATATTGGGATGAGGATAACTCTGAAAACTCTGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACCTTCAATTCTCTCTCAATGATTGTTGATGCATACTCAGACCAAGAACGATCGCAGCTTGCGCTTATTCAAAGGTTTCTATCTGGGGGCTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCCCGATGTACAGACTCCTATGTAGACCCCATGAAAGATCTACATCAACTTCCATGGCTAGAGAGGTTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGAAACTGTGATAGACTACCTAATAAGTTCGTCAACTTTCAATCTCAACAAGTTTTGAAAGGACGCAGAAAGAGTTTGTGATTCTATCCACTTTTCATCAAGAGGTGTAGCAACATTTGCATGCAATTTCTTGTATGTTCCCTGCTTGGATATCTTTAACCTAAGCTCTATCAAGGTGACAATCTGTTCATGATGATTCTCTTTTAGAGGAAGGGGAAAAAAAAAAGCAAAGCACATTTGGGAGTGAACATTTTGCTTGTGGTTAGGAAGAATACTAATTAAAAAGATTCCGGATTTTTATTGAGCCATGACACATTTCCTTATCACCAAATTATTAAACAGGAATTTATCTTCAATCGTTTATTCAACTATAATCAATCAGAAAAGGATGTAGTTATTTTCCAATCAAATTAGCAACTCTGTCACTTTAATC 2535 0.4016 MGDQGVSGVNVGREEEEDEFCSCCGDEDEEVWKETEEAVVEGLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVVMERSPGLPVIRVQKKLDFYAEDSVVDYLALLDGLLEAMQNKIRRVYAFTDSELLHDQACHASLFTITFGEKLVMPLLTALRERILELANNFEDFFLKLIPSTDLEQPLHLAKVAIGLVTFPVNGERLFKNCSICCDDKPMPIMITLKCSHTFCSHCLKAYADGKVQSCQVPIRCPQPGCKYCISTIECRSFLPFTSFESMEKALSEANIDQSDRIYCPFPNCCVLLDAHECLSAGASSSSQSDNSCIECPVCQRFICVDCKVPWHSSMSCVEFQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMRCWCDHEFCYSCGAEYRDGQQTCQCAYWDEDNSENSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLSGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02803 522 FunFam RBR-type E3 ubiquitin transferase 52 195 - -
Pste2g02803 522 ProSiteProfiles Zinc finger RING-type profile. 208 252 IPR001841 -
Pste2g02803 522 Coils Coil 33 53 - -
Pste2g02803 522 CDD Rcat_RBR_unk 373 409 - -
Pste2g02803 522 Gene3D - 345 470 - -
Pste2g02803 522 ProSitePatterns Zinc finger RING-type signature. 225 234 IPR017907 -
Pste2g02803 522 ProSiteProfiles TRIAD supradomain profile. 204 422 IPR044066 -
Pste2g02803 522 CDD BRcat_RBR_unk 289 350 - -
Pste2g02803 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 290 IPR013083 -
Pste2g02803 522 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 136 463 IPR031127 GO:0004842|GO:0016567
Pste2g02803 522 Pfam Reverse transcriptase-like 63 139 IPR002156 GO:0003676|GO:0004523
Pste2g02803 522 SMART ibrneu5 275 347 IPR002867 GO:0008270
Pste2g02803 522 SMART ibrneu5 357 416 IPR002867 GO:0008270
Pste2g02803 522 SUPERFAMILY RING/U-box 360 424 - -
Pste2g02803 522 FunFam RBR-type E3 ubiquitin transferase 345 470 - -
Pste2g02803 522 Pfam IBR domain, a half RING-finger domain 279 347 IPR002867 GO:0008270
Pste2g02803 522 Pfam IBR domain, a half RING-finger domain 367 416 IPR002867 GO:0008270
Pste2g02803 522 FunFam RBR-type E3 ubiquitin transferase 204 288 - -
Pste2g02803 522 Gene3D - 54 194 IPR036397 GO:0003676
Pste2g02803 522 SUPERFAMILY RING/U-box 206 284 - -
Pste2g02803 522 Pfam Zinc finger, C3HC4 type (RING finger) 208 245 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02803 Pste-Chr2 28066060 28072603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02803 51 407 C3H Transcription Factor Family AT2G19610 25.341 2.08e-26 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02803 2 28066060 28072603 Pste2g02803 2 28066060 28072603 ECH