Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02735 GATGAGTAATGTTTGTAGTATTGTACAGGTGATCTCCACCATTGCCATAACTGCGGAAGGATAAAAAGCTTTGAATCTGAATCATTGAAGGGACTGTGTTTGTGTCTCTCATTCTCACTTCGCGTGACCCCATGACCGACGGTGCCCACCTCTTTAACAACATCACTCTCGGAGGCCGTGGAGGCACTGTAATCACTTTCTCTCTCTCTAACCTTCCTTTCACTTCCCAAACCCTAATTTTTATTCAACCGTGCTTTTCTTTCAATATACTCTTATCGTTCCCCTTGCCTGCCAATCCCAGGCTTTTCTCTCCTCTGTTTTGTTTCTTCAGCTTTAATCCCTCATTATTATAGTAAGATTACCTGTTTCTTTTATAAATGTGTTTCAATTATTAAGTATATGAACATTGAGACAGGTTTTGAATCGCAGTTTTTATATTTAATACGGTCCGTTCACTGGCAATTACCGTTCAGGAGACCCCAAATGGCGGCAATTGCGCCCGTAAAACCGTAACCACTGTTGCTGATAGTTTTTTAAGACCTTGCTAGAAAATAGGCAATCTAAAGAAACGTTTTCATTTGAATAATATTTCTAGTTCTTCCATGCAAGTGCAAAGTTATTTTCATTCTAAATTTTCTTCCTTCTACCAGTAAGTGATTTCATTGGGTGGTTTTTTATGTACCATTTAGGTAATTTAACCTAATATCTCTAGGTACAAACCGAATGTGCATAGCATAAACCCTACAAAAAGTTGCGTTGCATGTTCAATGTCTACTGTCTAGTTTTTATCAGTTTCTTTGTTGTTTTAATAGAAAAATAATTTATAATTAGAGTCAAAGAATTAAAATTGTCTAGTGGATTTGTGAACGGAAGATTTGAATTAGCAGTTGAGATGTATCACACTTCTTTTCATGTAATTGAGATTGTAGAATACAGGACAGATAAAAATATATTCTGGAGGAATTATATGGAAGAGACAGGGTGGGGGTAAATTAATTGAAGTTGATAAATCAGATATAATGGGGGTGACATGGATGAAGGTACCAAGGACTAACCAACTTGGTGTTCAAATCAAAGATGGGCTGTATTACAAGTTCACGGGATTTCGTGACCAGGATGTTTCAAGTTTGACCAATTTTTTCCAAAACACCTGTGGAATACCAGTAGAAGAGAAGCAGCTTTCTGTTAGTGGGCGTAATTGGGGAGAAGTTGATCTAAATGGCTATAATTCTCTATCACGTCGTGTAATTCCTTACACATGGCGGTCAACACACTCAGAGTTAACATTCAAGGAGTCAACAACTCACAAAAGAGGAAATATGTTGGCTTTCATGGTTGGCTCAAAGCAAGCTTTTGAAGTGTCTTTAGCAGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTTATCTTGGAGTTTCATGTGGATGACACGACTGGAGCTAACGAGAAAGATTCACTGATGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTTTGTTGGTGACGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTAGGTGCAGGAGGTGAAGATGCTATTGTTACATTTGAGGGTATTGCGATCCTTACACCTAGGGGACGATACAGTGTTGAGTTACACATGTCATTCTTGCGGCTCCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTCGTCATTATAAGTCTTGACCCCCCTATTCGGAAGGGACAAACATTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGATTTGGTAATAAATGAAGATCTTTATAACTCAAAGTACAAGGATAAGTTGGAGCTGTCTTATAAGGGGCTTATTCATGAAGTGTTCACCACAATATTACGTGGCTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTAAAATCATCTTTGAAAGCCGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGATTAAAATCTGAACAAGAGCATCTCTTCCGCAATATTCAGAGAAATGAATACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGCCCAACCTGCTGTTGGTATAAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCTCATCTTGAGCGCATAAAAAATGAAGCTGGTGGAGATGATGAAAGTGATGAGGAGGATTCTGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCCAGTGATAGTGGTCATGAGAAAGAGAAGCCAGCCAAGAAGGAATCAAAGAAAGATCTGCCTTCTAAGGCATCTACTTCTAAAAAGAGATCAAAAGATGATGAAGAGGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTTTTTTCTAAACTGGAAAGAGAGAATCTAAAGAAAACAAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGAGGAGAAGGAACCGTACGAGGCTAAAGCACGAGAAGATAAAAAACGTTACAAGGACGAGATTAGTGGCTACAAGAATCCGCAACCCATGAATATTGATTCGGGAAATGAATCTGACAGTGCCTAAGGCATTTTCAATGTTCAAAAAGGTTTCTTTTTTCCTTTGCTCATAAGCAATTCCTGTCAGTTTATAGTTTCTACTCAGATGTAGTTTTTATACCTACTAATTGTCATGAGTAACACAACATAATGTAAGCCATGTTCCATATATTTCTTACATTTACTTTCTTTCCCCCCCAAAATGTAAATTACTTTAATTTTTATTTATCTATTTTTTATTGCTTTATTGTGTCTATTCTTAGAATTTT 3135 0.3799 MGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVSSLTNFFQNTCGIPVEEKQLSVSGRNWGEVDLNGYNSLSRRVIPYTWRSTHSELTFKESTTHKRGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAIVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSDLVINEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPAVGIKKVLENDDDDAVDPHLERIKNEAGGDDESDEEDSDFVADKDDEGSPTDDSGADDSDASDSGHEKEKPAKKESKKDLPSKASTSKKRSKDDEEGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKAREDKKRYKDEISGYKNPQPMNIDSGNESDSA 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02735 624 SUPERFAMILY PH domain-like 189 423 - -
Pste2g02735 624 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 540 608 IPR009071 -
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 202 218 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 383 399 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 224 240 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 247 263 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 399 417 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 357 374 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 339 357 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 PRINTS Structure-specific recognition protein signature 312 325 IPR000969 GO:0003677|GO:0005634
Pste2g02735 624 FunFam FACT complex subunit SSRP1 523 617 - -
Pste2g02735 624 Gene3D - 322 430 IPR011993 -
Pste2g02735 624 Gene3D - 1 59 IPR011993 -
Pste2g02735 624 Pfam Structure-specific recognition protein (SSRP1) 96 157 IPR024954 -
Pste2g02735 624 CDD PH2_SSRP1-like 325 424 - -
Pste2g02735 624 PANTHER FACT COMPLEX SUBUNIT SSRP1 2 69 - -
Pste2g02735 624 Gene3D - 90 162 IPR038167 -
Pste2g02735 624 CDD HMG-box_AtSSRP1 536 611 - -
Pste2g02735 624 Pfam POB3-like N-terminal PH domain 3 50 IPR035417 -
Pste2g02735 624 Pfam HMG (high mobility group) box 540 608 IPR009071 -
Pste2g02735 624 Gene3D - 182 321 - -
Pste2g02735 624 FunFam FACT complex subunit SSRP1 322 430 - -
Pste2g02735 624 SMART hmgende2 539 609 IPR009071 -
Pste2g02735 624 FunFam FACT complex subunit SSRP1 93 162 - -
Pste2g02735 624 SUPERFAMILY HMG-box 527 609 IPR036910 -
Pste2g02735 624 Pfam Histone chaperone Rttp106-like 333 422 IPR013719 -
Pste2g02735 624 CDD PH1_SSRP1-like 190 323 - -
Pste2g02735 624 FunFam Fact complex subunit ssrp1 182 321 - -
Pste2g02735 624 SMART Rtt106_2 331 424 IPR013719 -
Pste2g02735 624 MobiDBLite consensus disorder prediction 580 624 - -
Pste2g02735 624 MobiDBLite consensus disorder prediction 451 547 - -
Pste2g02735 624 MobiDBLite consensus disorder prediction 610 624 - -
Pste2g02735 624 Gene3D High mobility group box domain 523 617 IPR036910 -
Pste2g02735 624 MobiDBLite consensus disorder prediction 580 605 - -
Pste2g02735 624 MobiDBLite consensus disorder prediction 488 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02735 Pste-Chr2 27544994 27551620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02735 536 608 ARID Transcription Factor Family AT1G04880 41.096 4.91e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pste2g02735 Rtt106 3.3e-20 CL0266