LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02720	GTTTAGTGATTTGGACCTCTCTTGGTTTTGGCGACAAAAAACCATTGAAATTATTGAACGAAGAAAAAAGCTTTGCTTTACCTTTGACTCTCTCTCTCTAAGCCTAAGCTACCAGGAGCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTGCAAAAGCAACGAAGTTGTGTTCTGATCCTTCAAATTAGGTACTCTTTTGTTCTCTTCTTACTTTCCCCTCTTCCTCCACCCCTCCATTACCCTTCAAGTTCAACTCTTTTTCCATCTGGGTCTCTCTCTCTCCCTTCCGATCTGCTTCAGATTCCTCTCTTAACCACGTTTCCTTCTTCAAGATCCACTTTTTCTTCAATTCTCTCTGGTTCACTCTCTTCCACCTGCACCTCAATACTCTTTTTTCTCTCCATTATCCGTTTTACCCTTGCTCCCTTTTCTTCTCTTACCTTTTCCTCTCCCTCCGTAACCGTTCAAGTTTAACTCTTTTTCCATCTGCTCTCTGTCCTCCTTCGGATCTGTTCCAGATTCCACTCTAAACTGTGTTACCTTGATCAAGATCCATTTTTTATTCACTTCTCCCAGTATTACTCTCTTGCTCCTGCTTGTGGTTGTTTCTTATTTTGAGGACATAAATGGATCCTAAGCCATGGATTTGGTCAATTTGATCTCAATTGAAACTTTGTAGCATTTCTGATGGACTCAAAAAATAGTTCTAGAGCTCTCCCAAAACAGCATCAGAAGACAGCTGGGATTCAAAACCTTGAGGCGAAAGAAGTTGGGTCTTCTTCGCTGAAGACAGGAAAAACTGAGCTGGCTGCTCCGGAGGATTTGTCAAAGTCTGTAGCAAACCCGTCCAAGCAGAATACTGGGGAAACTACTGAAAGCAAGAAGTTAGGAGGTTCAATCCAAAAGGGGTTTGCTGATTCCTTGAGCAATAAAAGTGGTTGTGGTGCTTCCTCATCTGTTGTTGACAAGGCAGATCGTGCTACTAATGAGAACATAGGCTCACAGGAGAGTTCTATTGATCAAGATAAAAAGACGTCGGAATATGGAAGTGTGAAGAACAGTTCTGTTTCTGCAAAAGTTAGCGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGTGCCAAGATCAGCGATCGAGCTGATTTTGTTGAGAGTGGTAAGAGTAGTATTTGCAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCTATCCAAGCTGTTCGAAGTAGAGATGGGGTGTTGGGTTTGGGTCACTTTAGGCTCCTGAAGAGGCTGGGTTGTGGGGATATTGGCAGTGTGTATCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCAAGTCGTAAAAAGCTACTTCGTGCTCAGACAGAACGAGAAATTCTGCAGTCTCTTGATCACCCTTTTCTACCAACTTTGTACACCCATTTTGAGACCGAGAAATTCTCATGCTTGGTAATGGAATTCTGTCCTGGTGGTGATCTCCATACCCTTAGGCAGAAGCAACCGGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTACTGGCTTTGGAGTACCTTCACATGCTTGGGATTGTCTACCGTGACCTGAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCTGACTTCGACCTCTCCCTCCGATGTGCTGTTAGTCCAACCTTAGTTAAAACCTCATCCATAGATTCTGAGGCTTTGAGAAAGAATCCCGTTTACTGTGTCCAACCTGCATGTATTGAGCCACCTTCCTGCATCCAGCCATCCTGTGTTGCTCCTACTACGTGCTTTTCACCCCGTCTGTTCTCTAGCAAATCAAAGAAAGACAGGAAGCCAAAAACTGAAATTGGAAACCAAGTGAGTCCATTACCTGAGCTCATTGCAGAGCCAACTGATGCACGGTCCATGTCATTTGTTGGAACTCATGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGGATCTTTCTATATGAGCTGTTGTTTGGTAAAACACCTTTCAAAGGATCCGGCAACCGAGCTACGTTGTTTAATGTGGTCGGCCAGCCACTGCGATTTCCTGAAGCACCTGTTGTGAGTTTTGCAGCAAGGGATCTTATCAGGGGGTTGCTTGTGAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGAGCAACTGAGATAAAGCAACACCCCTTTTTTGAAGGTGTGAATTGGGCCTTGATCAGATGTGCTACCCCACCTGAGATTCCAAAGGCTGTAGAGTTTGAGAAGATACCATCCCCAGCCTCATCAGGTGGTGGTGAAAAGGCTGTTAACCATATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAGAGGTAGAGACAATATTGATTGCAAATGGTTTCTGTTAAGAGGGGAGGAACTGTTTTTCAATGTTTCAGGAACAGATGATGAGGAATTGTATGTTTGTTTTTGTTGGCTATTTGCAGTTTCAAATTTGTATGGCATAATTAATGCATGGCTTCTCTGTCATCTCAAAAAGGGCATACTATAAAAAAGAACATTTCTCCACTGCCACCAGGAATTCTTCCAACCAGCTAAATGGTATTGGTAAGTATGCAATCGTGGGCATGCATCAAACAAAATGCAGATTTTAAGTTTTATTTCTTTCAAAACAACTGTCATTTTTCTGCCTATAAGAACTCACCATTGCCTGAACTCACGGTCATAGTATCTTAATCCAAAATCAATTAAAATGCAATATAGTCAGTTTATGTTTATGCTTTTAATTATGGGCATGGCAAGATAGTAATATTTCTTTTTTTCCGCGAGCATTATTTATGTTCGATGGACACTAGTAGGATCGCGTTTAATGG	3018	0.4261	MDSKNSSRALPKQHQKTAGIQNLEAKEVGSSSLKTGKTELAAPEDLSKSVANPSKQNTGETTESKKLGGSIQKGFADSLSNKSGCGASSSVVDKADRATNENIGSQESSIDQDKKTSEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRSRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSIDSEALRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSGGGEKAVNHMSIANQKGSDNYLEFDFF	608

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g02720	608	MobiDBLite	consensus disorder prediction	10	37	-	-
	Pste2g02720	608	Gene3D	Transferase(Phosphotransferase) domain 1	444	568	-	-
	Pste2g02720	608	FunFam	Serine/threonine-protein kinase D6PK-like	210	295	-	-
	Pste2g02720	608	CDD	STKc_phototropin_like	211	568	-	-
	Pste2g02720	608	FunFam	serine/threonine-protein kinase D6PK-like	296	363	-	-
	Pste2g02720	608	MobiDBLite	consensus disorder prediction	1	126	-	-
	Pste2g02720	608	Gene3D	Phosphorylase Kinase; domain 1	210	295	-	-
	Pste2g02720	608	PANTHER	FLIPPASE KINASE 1-RELATED	39	574	-	-
	Pste2g02720	608	FunFam	Serine/threonine-protein kinase AGC1-7	443	568	-	-
	Pste2g02720	608	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	333	345	IPR008271	GO:0004672\|GO:0006468
	Pste2g02720	608	MobiDBLite	consensus disorder prediction	49	110	-	-
	Pste2g02720	608	ProSiteProfiles	Protein kinase domain profile.	212	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02720	608	Gene3D	Transferase(Phosphotransferase) domain 1	296	371	-	-
	Pste2g02720	608	SUPERFAMILY	Protein kinase-like (PK-like)	187	569	IPR011009	-
	Pste2g02720	608	Pfam	Protein kinase domain	213	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02720	608	Pfam	Protein kinase domain	447	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02720	608	SMART	serkin_6	212	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02720	Pste-Chr2	27421009	27425286	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g02720	36	608	AGC Kinase Gene Family	AT5G47750	78.223	0.0	881

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Pste2g02720		Pkinase	1.7e-36	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g02720	2	27421009	27425286	Pste2g02720	2	27421009	27425286	ECH