Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02704 AGCGAAGCGAAAAATCTAGCAATGGAGAAGAAGAGAAGGACAAGCATATATTAAGAGTAGTTAAGCTAGCGAAAACGGAAAAGGAAGGGATGGTAACTGGTAAGAGTATATTAATGCAGGGAAGAGACAGTGAGGACACGATACTTCACAAATCCCTTGTCTTTCTTCCTTCTCTTTTTTTGGCCAGCAAATTAGAGTTTGCAGCTGTCAGATCCCTTTCTCTCTCTCATCCCTTTTAATAAAAATAAATTTCTTTCCTTTCCTTATATATTTTTGTTGCAATCAACCAACACCTCTGTTCCAAACAACCATCAAATAATAACCATTATACATTATCATAATTCATAAACCATACCCAGCTCCTTCTCTTGAAAAGCAATGATTCCTCTGTTTCCAAAACCAAGAGTGACACTTACATAGTACAAAGCAGAGAGATTTTATGGAACTTTGGGCGAGAGAAAGAGAAGAAAGTGCTTAAATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCAATTTCTTCTTTGGATGCCATGGCTCATCATCACCACCCACATTATCGGTCACCGTTCGGAGACACAACGTTCACCAAATTGTTCGTGGGAGGACTAGCCTGGGAGACTCCCACCCAAGAAATGCGCAAATATTTTGAGCAGTTCGGTGACATTCTTGAAGCTGTCATAATCACTGATAAGAACACCGGAAAATCCAAAGGCTACGGATTCGTAACATTTTGTGATCAAGAATCAGCTAGAAGAGCATGTGCTGATCCCAATCCAATAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTTGGAAGGACTAGACCATCACCACCTCGAGGGAGGAGTATGGTTCAAGGTGGAGGAGGAACAGCGCAAGGTGTTCCGGGAGCGGGGCCGCCATTGTCGCTGCCGCCACCGCCAGCAGTTCTGTATCCGCCATATGGATATACAACCTACTCTCCTGATTATGGGTACCACCAAACCACATTATACAACCCACAGATTCAGCAACCACAATACTATCAACAACTTTATGGAGCATCATCTTCTACCATGAGCACACCATATTACTACGGTTATTCTGTGCAAGCACCAAGAAACACATTTTCTTCACCCCAAGCAAATCGCCTATCTCCTGGACCATCCTATCTATACTACCCTACACCCATGGAAGTCTCATTTTCTGGATATCGTCCACCCCAACAATCACCAATGAGGCAACCCTTTCCTTCTCCTAACGATTCACAGAGTCAGCAGCGAAGCTCCTCTGAAACAGCAGCTGGGGTAGCTATAACTTCCGAAAGTTCAAACACCCAAGGGAAGAACTAATAAATATATATACCTGCTAAGTTTCAACTGTTTAATCTTCAAGTTAAATTTCATCAAATTAATTCTTCATCTTTTTCACATTACATCATAATTTTTTCAGTCCTTTAGCTTTTGCTTTAGAAAAT 1470 0.415 MSETASLHAQTRTPISSLDAMAHHHHPHYRSPFGDTTFTKLFVGGLAWETPTQEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRSMVQGGGGTAQGVPGAGPPLSLPPPPAVLYPPYGYTTYSPDYGYHQTTLYNPQIQQPQYYQQLYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPMEVSFSGYRPPQQSPMRQPFPSPNDSQSQQRSSSETAAGVAITSESSNTQGKN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02704 288 SMART rrm1_1 40 112 IPR000504 GO:0003723
Pste2g02704 288 MobiDBLite consensus disorder prediction 240 288 - -
Pste2g02704 288 FunFam RNA-binding protein 24-B isoform X1 26 135 - -
Pste2g02704 288 CDD RRM_RBM24_RBM38_like 39 114 - -
Pste2g02704 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Pste2g02704 288 MobiDBLite consensus disorder prediction 241 288 - -
Pste2g02704 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 98 IPR000504 GO:0003723
Pste2g02704 288 SUPERFAMILY RNA-binding domain, RBD 23 142 IPR035979 GO:0003676
Pste2g02704 288 Gene3D - 6 136 IPR012677 -
Pste2g02704 288 MobiDBLite consensus disorder prediction 114 143 - -
Pste2g02704 288 PANTHER BOULE-RELATED 17 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02704 Pste-Chr2 27257973 27262477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02704 35 115 C2H2 Transcription Factor Family AT2G19380 38.272 6.64e-14 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02704 2 27257973 27262477 Pste2g02704 2 27257973 27262477 ECH
Pste8g01841 8 13085275 13090598 Pste2g02704 2 27257973 27262477 PCT