Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02629 CAGCTTTCTTCGTTATGCGTTGATAAAAGGGGGAGTTTGTTTGGTCCATTGGGAATGTAGTGCTTCCCCATCCACCTCTCTCTCTTTTCCCACAACTTGTTCTTTATCCACTAGCTTCTAATAATTAACCTCTCCATCCCACAAAAAAACTAGTGTTAGTGACTTGGTGTCTCCTTTGGCAACAACAGGGAGAGATCATTGTCAAATAATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCCTTTGCATATGGTTGCAAGGATTACTTGTACTCTTTAGTCGGAGCAACATCCAACTACGGTTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCTTAGGAATCATCAACAACAACATAGAACAGAACCTTCATGCGAACTGGGACTCTTCTTCGACCTCGGTGATGCACAATGTTAAAGAACAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCGTTGATCCTCCTTCTTCGTCCAGGATGACCAGCAGGCGTAAACGACGTCGCACCAAGAGCGCCAAGAACAAAGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAACGCAATCGCAGAAAACAGATGAATGAATATTTGGGAGTACTCCGATCCTTGATGCCTTCTTCTTTCGTACAAAGGGGAGACCAAGCTTCAATTATTGGAGGGGCCATTAACTTCGTGAAGGAGCTGGAGCAGGTTTTGCAGTCCATGGAGGGCCAAAAGAAAACGCAGGAGAATGTTGGGTGGACACCCTTTGCGGAGTTCTTCACGTTTCCTCAGTACACGACACGTGGCAGTGGCAGTGGCACGAGCACGATGGCGCAGCAGCAGCAGAAGAAGAAGCAGGAACAGAAACAGTGGGCCGTGGCAGACATTGAAGTGACCATGGTCGATAGCCATGCCAATCTAAAAGTCCTCTCAAAGAAACACCCGGGCCAACTCATGGAAGATCGTTGTTGGGCTTCAAACTCTCAGCCTCACCATTCTTCACCTCAATGTTTCCACTCTCCATGATATGGTTCTTTACTCAATTAGCGTCAAGGTTGAGGAGGCATGTCAGCTCAACACGGTGGATGAAATTGCGGCTGCAGTCAATCAACTATTACGCGCAATCCAACAAGTTACTTTCAATTAAATTAAACTTTTATTAATTTCCATCCTTCTCTTGGTCTAGTATATATATTTTTGGGATATCTGTCCATTGCAATTTGCAATATGCGAACGGCTTAACAATGTTGCACTTTTATTATGTTCTATAGACCACCCTCTACTTGAAATGCTTAAGGTTGTATGTACATCCAACTGCCTAACAAATTAAATCTCA 1331 0.4523 MALEAVVFPQDPFAYGCKDYLYSLVGATSNYGFQAAEEEKVLLGIINNNIEQNLHANWDSSSTSVMHNVKEQWDSHSSPEACTVDPPSSSRMTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLGVLRSLMPSSFVQRGDQASIIGGAINFVKELEQVLQSMEGQKKTQENVGWTPFAEFFTFPQYTTRGSGSGTSTMAQQQQKKKQEQKQWAVADIEVTMVDSHANLKVLSKKHPGQLMEDRCWASNSQPHHSSPQCFHSP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02629 270 MobiDBLite consensus disorder prediction 69 90 - -
Pste2g02629 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 177 IPR036638 GO:0046983
Pste2g02629 270 Gene3D - 93 179 IPR036638 GO:0046983
Pste2g02629 270 PANTHER MAX DIMERIZATION, MAD 75 249 - -
Pste2g02629 270 SMART finulus 118 169 IPR011598 GO:0046983
Pste2g02629 270 CDD bHLH_AtFAMA_like 115 178 - -
Pste2g02629 270 Coils Coil 160 180 - -
Pste2g02629 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Pste2g02629 270 MobiDBLite consensus disorder prediction 250 270 - -
Pste2g02629 270 FunFam Basic helix-loop-helix transcription factor 103 178 - -
Pste2g02629 270 Pfam Helix-loop-helix DNA-binding domain 113 164 IPR011598 GO:0046983
Pste2g02629 270 MobiDBLite consensus disorder prediction 69 108 - -
Pste2g02629 270 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02629 Pste-Chr2 26559632 26561154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02629 1 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.745 3.23e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g02629 HLH 3.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02629 2 26559632 26561154 Pste2g02629 2 26559632 26561154 ECH
Pste8g01822 8 12769176 12771696 Pste2g02629 2 26559632 26561154 PCT