Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02613 ATGAGTGAAGTGGGTGCGGCGGATCAGAGGGAGGCAAGGAAGAGGACCATTCTGGGCTTGTTGAGAGAGCAAATGGAAGGGGTAGATGCTGCCAACCCAAGGAGGCGTAGCTTCAAGGAACGCTTTGGATTCGCCTGCTGTGGGACCAAATGGGGATTCCGTTCTCTCCCACACACCCAGCGAGACCAAGACCAACCACAAGTATTACCATCCCACCCGCCTCCAGTATCTCCACTCCACTGTTTGGCTCCCGCCATGAATCTCGCGGCGGCGCTCGCAGCCGAGAGGCAGCTGCGTGGGCCTCAGGATGAGCCCGGGCCTCTGAGGGCTCCGGGCACCCCGTGGAGGGTATCCCTCATGAGCCTGCTGGAGGAGGAGGAGGAAGAGAAAGGACTGGGGCTTGTGGGGAATGATTCCCTGTGCTGCGTCTGCATGGGGAGGAACAAAGGCGCAGCGTTCATCCCATGTGGCCACACTTTTTGCAGGGTTTGTTCCAGACAACTCTGGCTCAATCGACTCTCCTGTCCCCTCTGCAATCGCTCCATCCTCGACATTCTCGACATTTTCTAG 570 0.5842 MSEVGAADQREARKRTILGLLREQMEGVDAANPRRRSFKERFGFACCGTKWGFRSLPHTQRDQDQPQVLPSHPPPVSPLHCLAPAMNLAAALAAERQLRGPQDEPGPLRAPGTPWRVSLMSLLEEEEEEKGLGLVGNDSLCCVCMGRNKGAAFIPCGHTFCRVCSRQLWLNRLSCPLCNRSILDILDIF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02613 189 PANTHER OS01G0917900 PROTEIN 71 189 - -
Pste2g02613 189 SUPERFAMILY RING/U-box 140 185 - -
Pste2g02613 189 SMART ring_2 141 178 IPR001841 -
Pste2g02613 189 ProSiteProfiles Zinc finger RING-type profile. 141 179 IPR001841 -
Pste2g02613 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 189 IPR013083 -
Pste2g02613 189 Pfam Zinc finger, C3HC4 type (RING finger) 138 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02613 Pste-Chr2 26337856 26338425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02613 17 189 C3H Transcription Factor Family AT4G22250 49.490 3.03e-50 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02613 2 26337856 26338425 Pste2g02613 2 26337856 26338425 ECH
Pste6g04419 6 33486132 33491420 Pste2g02613 2 26337856 26338425 PCT