Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02606 GGATTGCCATCAAAGAATGGAAAGAGAGAGAAGGAAGGAAGGGTTGGTTTTGATTCCGTGCCCCATAAACATAAACCTATCTATCTCTTCTCCAATCTTCATTCATGGTCAGTACTGAGTAGTAGGAATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGTTTTCATTGGGAAGGTAAAAGCCTTTGTTTGCAGCAGTGCCTTACATGAACCCTCGCCCTTCTCTTCTTGGCTAACTCATTGTTTTCTCAGTGTACCCCGCGTGCGCTCTGCTGTCTCTTCTCACTCACAACAAGCCATGGAGGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACTAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACACCTTCTATCATGCTCGACAATACCCACAACAACAACACTGATAACAACAACAACAACACTGGGTTAGGGTACTATTTCATGGAGAGTGACCACCACCACCGCAACAACAACAACGGAAGCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCTAAGATCATGGCCCATCCTCACTACCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAATGACAATGGCAGGTGATGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTACGAGCAAGAGCTCTCCAAACCCTTGAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACAATTTCTTCCTCCGACTTTGGTTGTAACGAGGGTGGTGACAAGAATGGATCATCTGAAGAGGATATTGATCTGCAAAACATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACTTGGGAAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCCGAATCACAGAAGTTGGCTCTTGCAGAGTCCACAGGTCTGGATCAAAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAACCATCCACACTATTACATGGATAATGTTCTGGCCAATCCATTTCCCATGGATCTTTCCCATCCCATGCTCTAA 1419 0.4567 GLPSKNGKREKEGRVGFDSVPHKHKPIYLFSNLHSWSVLSSRNGSVSVAVQEKRGRVFIGKVKAFVCSSALHEPSPFSSWLTHCFLSVPRVRSAVSSHSQQAMEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHAGHHPINPNPSNNTNNANTNCLFIPNCSNSGTPSIMLDNTHNNNTDNNNNNTGLGYYFMESDHHHRNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAMTMAGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFGCNEGGDKNGSSEEDIDLQNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPNHPHYYMDNVLANPFPMDLSHPML 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02606 472 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Pste2g02606 472 Pfam KNOX1 domain 218 257 IPR005540 GO:0003677|GO:0005634
Pste2g02606 472 Pfam KNOX2 domain 271 318 IPR005541 GO:0003677|GO:0005634
Pste2g02606 472 Gene3D - 379 441 - -
Pste2g02606 472 SMART HOX_1 376 441 IPR001356 GO:0003677
Pste2g02606 472 SMART KNOX2_2 268 319 IPR005541 GO:0003677|GO:0005634
Pste2g02606 472 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 443 - -
Pste2g02606 472 FunFam Homeobox protein knotted-1-like 2 379 441 - -
Pste2g02606 472 SUPERFAMILY Homeodomain-like 376 451 IPR009057 -
Pste2g02606 472 ProSiteProfiles ELK domain profile. 354 374 IPR005539 GO:0003677
Pste2g02606 472 CDD homeodomain 386 438 IPR001356 GO:0003677
Pste2g02606 472 SMART KNOX1_2 217 261 IPR005540 GO:0003677|GO:0005634
Pste2g02606 472 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Pste2g02606 472 MobiDBLite consensus disorder prediction 199 218 - -
Pste2g02606 472 ProSitePatterns 'Homeobox' domain signature. 412 435 IPR017970 GO:0000981|GO:0006355
Pste2g02606 472 SMART ELK_2 354 375 IPR005539 GO:0003677
Pste2g02606 472 Pfam ELK domain 354 375 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02606 Pste-Chr2 26194711 26201447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02606 219 472 Homeobox Transcription Factor Family AT1G62360 79.771 1.79e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste2g02606 KNOX2 3.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02606 2 26194711 26201447 Pste2g02606 2 26194711 26201447 ECH