Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02582 CATAGCTTAGCTTCAACAGTACCCAATAGAGATTCAACAAAAGAGTTCAATGCCCTCTCCCCTATTCCAAGTTATATCAACAAGAGTAGTCCTGAGAATATTGTCAGGAACACAATAGACTCATGTTGGCGAGCCAAAATAAATTGGGCTTCTAATCGTCAATCCTTGGCTGATTGTGCAATTGGTTTTGGCAAAGATGCCTTAGGAGGAAAATTTGGAGATATATATGAAGTCACTGACCCTTCTGATGACCCCGTGGACCCAAAAGCTGGCACACTTCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACCTTCGCCAATGACATGGTGATAAAGCTGAAGAAAGAGCTTATGGTGAATAGCTACAAGACCATTGATGGGAGAGGAGTCAATGTGGAGATTGCAAATGGACCTTGTCTTACAATAAAAGGTGTTAGCCATGTAATCATACATGGAATTAGTATTCATGATTGTAAACCGAGTAAGGCTGGCATGGTGAGGAGCACCACTGAGTATGTTGTGTATCGTGACGGGTGTGATGGAGATGCCATTAGCATATTTGCCTCCTCCAATGTCTGGATTGACCATTGCTTTTTGGCTCGTAGCACCGATGGTCTCATTGATGTTATTCATGCCTCAAATGCTGTCACCATTTCTAACAATTTCTTCACCCAGCACGACAAAGTGATGCTGCTAGGACACAGCGATGAATACAGCGCGGATAGAATAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCTTAATAGAAAGAATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTCAACAACCGGTATGATGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGATCCTACTATTTTTAGTGACAGAAACTATTTTGTGGCTTCAGATGATTCTGCTGCAAAACAGGTTACAAAGAGGGAAACTAGTGAAAAGTGGAATAATTGGAAATGGAGGAGTTTTCAGGATGAATTCTTAAATGGTGCTTATTTTGTGCAATCTGGGTATGGAAGTTGCACCCCAATATATTCAGCTGCTCAAACATTTGTCTCAGTCCAGGCATCGATGGTGCCCTTATTAACTCTCAATGCAGGGCCATTGAATTGTAAATTTATAGATCAGCTTTTAAGCATGGCCACCTCTCCCTCACTGCTCTTCCTTTCATGCTTCATACTGCACCTTGCTTTTGCTTCTACCCCTATCAATGCCTATTCATATTCAACAAAGAGCGTTGTCCTAAACAACATAGACACTTGCTGGAGGACCAATTCAAATTGGGCATCAAACCGCAAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATTCAATTGGAGGCAAATATGGAGCAATATATAAAGTAACAGATCCCTCTGATGACCCTATAAACCCAAAACCAGGTACACTTCGTTATGCTGTGATCCAAACACAGCCCCTTTGGATCATTTTTGCCAAAGATATGGTTATTAGGCTCAAGAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATAGCAAATGGGCCGTGCATTACAATACAAAGTGTTAGCCATGTTATCATACATGGCATTACCATCCATGATTGTGACCCAAGCAAGCCTGGTCTTGTAAGGAGTAGCCCTTCTCATGTTGGCCATCGTCTAGGCTCTGATGGGGATGGCATTAGCATATTTTCCTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGTTTGATTGACGTTATTCATGCCTCGACTGCCATTACCATTTCTAACAACTACTTTACCCACCATGACAAAGTAATGCTACTAGGACACAGCGACGAATACATAGCAGATAAAATAATGAAAGTAACAATAGTCTTCAACCGATTTGCCAGTGGTCTGATTGAAAGGATGCCAAGGGTAAGATTTGGCTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCGATAGGTGGCAGTTCTAACCCAACCATTCTAAGTGAAGGAAACTACTATGTAGCTCCGAATAACTCTGCCTCAAAACAGGTTACCAAGAGGGAAAAGAAGGGAAAACTGAAAAGCTGGAAATGGAGGTCTTCTAATGATGCATTCCTAAATGGTGCTTATTTTGTTCCATCTGGGTATGGAAGTTGCGACCCAAATTATTCACATGCTCAATTTTTTACTGCTGCACCAGCTTCCCTGGTTCCCGCAATAACATTCAATGCAGGTCCCTTGACTTGTGTTGTAGGCAAAGCATTTTATTCCCAAAGCACGGCTTTGGAGGTGCCTATTTTCGTTGCTTTGAACTCCACACATAACTGGTGCTTTGGCTCTCACTTTCTTCAAATACCAAACGGCAGCTCCAATTCCAAATACACCCGCAACAGAAACGGCCGTAACTGTTCCTGCAGGCACAATTTCACACACAACCACAAACATAAGCCTAGTGATCCACTTCAGAAACTTACACATCCAAATAAACGTTATTTTAATTCTCTCACCTGTGATTACATGGACCCTCCTCCTGTGCCTTGCAATATCACCTTGACAATGAGTAGTGGAGTTTCCATCCTTACAGAGACAAAGGAAAGTGTGGTTGCGAGTTTCAAAGCCACAAGTGCCATGTCCTTTGAAGGGATCCTGGCACTGAAGGCAACGGGTGGTTACAGGGATAAGAAAATCAAGTCGGATCCCATATTGGGGGAGTTGATCATAAGGCATAGGAGCACCAACGTTCTTCCAATAAACGCTAGCATAAGTAGAACAATACTTAAGCATGAGGCTGAAAGAGTGGGTGGCTTTGGGATAGTAAGAGCAACAAGTAGTGCGAGGAAGTGCAAAGGAGCAGGCAGGCAAGTGGGTGCAGAGATGGCTGGCACTGTCACAGGAGGAGTCGCAGTGTTGAGGAAAGTGGTCACAGAACAAAGGTTTTGGCTGAATGAGGACGTGGTCTTGGGTGCAGTTAAGGAACATGTACTCGTTCTGGGGAGACAACTTAAAGTGGCTGCTGCTGTCCAAAGAGAAAGGCCTTGTGGGCCGAAACTTCTCTCCGTCCTCGCAGCTCCACATCGATGGATCAGTTATCACCATAGTAGCTCAAGTTCCCAACTGGGTATCTCCCTGACGGGGTTATCAGTTCCAGCTTTCCCTTCTTCGAACACTCCAGAATCTCTCTGTAGGCTTCCGCATCCCTCGTCTATCCCAAATGGATACTTAATTGGGATGTCACCGCATGACGTTCTGCACACCTTACACTCACTTTTTCTCAGACTCAGACTCAGGAGTGATAGTGATAATAGAATCACTACTGATGACATTCTATTTCTCACAACTCTCAACTCTCAACTCTCAACTCTCAACTCTCAACTCTCAACTCTCAACTCTCAACTCTCTTGTGAACGCTTTATCAATCCTAAGAGGAAAAAC 3471 0.4359 HSLASTVPNRDSTKEFNALSPIPSYINKSSPENIVRNTIDSCWRAKINWASNRQSLADCAIGFGKDALGGKFGDIYEVTDPSDDPVDPKAGTLRYGAIQTEPLWITFANDMVIKLKKELMVNSYKTIDGRGVNVEIANGPCLTIKGVSHVIIHGISIHDCKPSKAGMVRSTTEYVVYRDGCDGDAISIFASSNVWIDHCFLARSTDGLIDVIHASNAVTISNNFFTQHDKVMLLGHSDEYSADRIMKVTVAFNRFASGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSDRNYFVASDDSAAKQVTKRETSEKWNNWKWRSFQDEFLNGAYFVQSGYGSCTPIYSAAQTFVSVQASMVPLLTLNAGPLNCKFIDQLLSMATSPSLLFLSCFILHLAFASTPINAYSYSTKSVVLNNIDTCWRTNSNWASNRKALADCAIGFGKDSIGGKYGAIYKVTDPSDDPINPKPGTLRYAVIQTQPLWIIFAKDMVIRLKNELIMNSYKTIDGRGAKVEIANGPCITIQSVSHVIIHGITIHDCDPSKPGLVRSSPSHVGHRLGSDGDGISIFSSSNIWIDHCFLARCADGLIDVIHASTAITISNNYFTHHDKVMLLGHSDEYIADKIMKVTIVFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYVAPNNSASKQVTKREKKGKLKSWKWRSSNDAFLNGAYFVPSGYGSCDPNYSHAQFFTAAPASLVPAITFNAGPLTCVVGKAFYSQSTALEVPIFVALNSTHNWCFGSHFLQIPNGSSNSKYTRNRNGRNCSCRHNFTHNHKHKPSDPLQKLTHPNKRYFNSLTCDYMDPPPVPCNITLTMSSGVSILTETKESVVASFKATSAMSFEGILALKATGGYRDKKIKSDPILGELIIRHRSTNVLPINASISRTILKHEAERVGGFGIVRATSSARKCKGAGRQVGAEMAGTVTGGVAVLRKVVTEQRFWLNEDVVLGAVKEHVLVLGRQLKVAAAVQRERPCGPKLLSVLAAPHRWISYHHSSSSSQLGISLTGLSVPAFPSSNTPESLCRLPHPSSIPNGYLIGMSPHDVLHTLHSLFLRLRLRSDSDNRITTDDILFLTTLNSQLSTLNSQLSTLNSQLSCERFINPKRKN 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02582 1157 SMART amb_all 495 692 IPR002022 -
Pste2g02582 1157 SMART amb_all 110 307 IPR002022 -
Pste2g02582 1157 Pfam Pectate lyase 115 301 IPR002022 -
Pste2g02582 1157 Pfam Pectate lyase 502 686 IPR002022 -
Pste2g02582 1157 SUPERFAMILY Pectin lyase-like 57 377 IPR011050 -
Pste2g02582 1157 SUPERFAMILY Pectin lyase-like 422 759 IPR011050 -
Pste2g02582 1157 Gene3D - 36 376 IPR012334 -
Pste2g02582 1157 Gene3D - 421 761 IPR012334 -
Pste2g02582 1157 PANTHER PECTATE LYASE 18-RELATED 418 766 IPR045032 GO:0030570
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 669 688 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 739 762 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 444 461 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 567 588 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 467 492 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 647 666 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 709 733 IPR018082 -
Pste2g02582 1157 PRINTS Pollen allergen Amb family signature 503 519 IPR018082 -
Pste2g02582 1157 Coils Coil 1124 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02582 Pste-Chr2 26032249 26042218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02582 393 766 Polysaccharide Lyase AT1G11920 68.074 0.0 536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02582 2 26032249 26042218 Pste2g02582 2 26032249 26042218 ECH