LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02559	GACGTCAGATCGCAGCCACACTGCCCTGTGAACCTTTAACCTCCACTCCTTCAACCGTACACCTTCTCACAAGGGATAACTAACTCCTACTACAGCTACTTCCACTTTCATTCTTTCTTTCTTCTTAATCGAGAAACACCTTTCACCACACGCCCACGTTCACGCCGTCAAACCAAATTTCACACTCCTTTCTCTTCACTGCGTTCCACCAAACACACACCTCACTCACTCCATTCAATTCTCAATTCTCGCTCTCTCCCTCTTCTCCAACCTTCCACATCTTCCCGCGCTTCCAATTTCCCTCACGTAAACCATGCTCCACCGTTGACGAAATTAGGGTTTCTGCTGTTGCAATCCATGTCCACCGTGAATTCGCAGCAGTCTCTGCAGTTCGAGGACCCTGCCATGCCCCTTGACGACGACGACGACGACGACGACGACGACGAAGACCGTGGTGATGATGCCATGGATGAGTTGGAAGAAACGAACGTTAATTCGGTGAACGCTGCTAATGCCGCGAGTGCGAGCCATGAAGCGGGAGTGGCTATGCCTTCCAGAACTAGCGAACTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTGCAAGCCGTCTTGCTGCTTCTGGGAGGACGTGATGTGCAGGCAGGTGTGCCAGCAGTTGAACTACCATTCGATCAAAGTAACATGGGCATGGGTGTTACTCCAAAGCTTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTCCGCGAGAAACGCAAGGAGAGATGTTTTGACAAGAAAATTAGGTATTCGGTGAGAAAAGAGGTGGCACAGAGGCCTGAGTTGTCAGATAGTTGGTACTTGAGTACCACTTTGAGGGCTTCTAGCAGGATTTTGTTTGATTTCAGGATGCATCGGAAGAATGGGCAGTTTGCATCCTTGAAGGAAAGCCCAGGCTCATCGAATTGGGATTCTGAACGGAGTTCTGGTCAAGATGGCACTTCTTATTCTGAATCTGTACGTAAATGTCACCATTGTGGTGTAAGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGTGGTCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCACTAAGGGAGGAAGAAATCCTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTAGTTCTGTTCTTGAAAGGGAATTGCCTGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCCAATGCAGCTGATGGTTGTAGTAATCATGCTGTAAACCCTAGTGATGAGGAATTGCCTGAAACTTCAAAACACTTTACGAACGCTCTGCCACTGGGAATTGATCGTTCTCCAACAAATGACAATGAACAGGAACCTCTGGTCGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAGAAGGTACTAAGTGATTCATTACGTTGAGGGATTTTATATAATGGTCCCTCTGTAGTATATTGTTGGTGTACTAATGAGATGCAGATGTAAAAGCAGTGATACATACCAATAGACAATTAGGAAATTCGGGGTTATGAATTATTGTATCCCTCAGAAATGGAAATGATTACCGATTAGCAAGGGTCAAGAAGCTCTGCTGTTCGGGCCTAACATTAAGTAGTCCGCAATATTGGTGCTCATAAGTGCCAAAACATTGTGTATATATATGTTATCAGATGCTCTTCCTTCAGTGTTTATATCAGGAAATATTCATTAGTTAAGGCCGTCCTTAGTAACAATGCTGTCTGCTTGTCCCTGACCAATAATTTTATTGAGATCAAAGCTCTGCTACCCTGATTTTAGAGATGAAATTTCGGTGATATGCTGTGCCACTCAACTCAAGGATGAATTGCTTGTGCTAATTCCAACCTTTGACGAAGTTTAGACTTGTGCCGCAGGGCTCTTGATGAAAACATTTGGATATGTTAATTCGTACAGATAGACAGACTTGTTCCAACTTCCAAATGTACACACATATATATAAATAAATATTAGTTGTCGTCTTCTGTGTTTTTCCATACATATGTTATCATTGTTGTTGCAATGGCCTGAAATGGATTGCCAATGTAGTCATAATCATATCCTAATTTTATATTAAGCATAGTCTTGTTAGAA	2205	0.4385	MSTVNSQQSLQFEDPAMPLDDDDDDDDDDEDRGDDAMDELEETNVNSVNAANAASASHEAGVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQAGVPAVELPFDQSNMGMGVTPKLSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRPELSDSWYLSTTLRASSRILFDFRMHRKNGQFASLKESPGSSNWDSERSSGQDGTSYSESVRKCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGGRNPSVEQSDLDTPIDVKPSSVLERELPGIHDEQGSSEDPSKSNAADGCSNHAVNPSDEELPETSKHFTNALPLGIDRSPTNDNEQEPLVELSNPSDTDIDIPGNFD	377

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste2g02559	377	Gene3D	-	219	278	IPR013088	GO:0006355\|GO:0008270
Pste2g02559	377	MobiDBLite	consensus disorder prediction	1	47	-	-
Pste2g02559	377	SMART	GATA_3	221	274	IPR000679	GO:0006355\|GO:0043565
Pste2g02559	377	ProSiteProfiles	Tify domain profile.	64	99	IPR010399	-
Pste2g02559	377	Pfam	CCT motif	132	162	IPR010402	GO:0005515
Pste2g02559	377	MobiDBLite	consensus disorder prediction	16	41	-	-
Pste2g02559	377	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	225	271	-	-
Pste2g02559	377	SMART	tify_2	64	99	IPR010399	-
Pste2g02559	377	Pfam	GATA zinc finger	227	263	IPR000679	GO:0006355\|GO:0043565
Pste2g02559	377	CDD	ZnF_GATA	226	274	IPR000679	GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02559	Pste-Chr2	25837314	25845296	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g02559	10	269	Tify Gene Family	AT1G51600	44.118	4.28e-59	192

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Pste2g02559		GATA	2.1e-13	CL0167

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g02559	2	25837314	25845296	Pste2g02559	2	25837314	25845296	ECH

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