Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02510 CCAAAAGCAAGTAGTCCAGAAGAAGATGCTAGCAAGATTTTGAACCGCCATAAAGCATACATGATGACCTATTCTAATTGTGAGGTAGAGGGTATAATTCCGATGAATAATGTCGTGAATAAACAGAAAAGACAGCGAACACCATCAGCTTATAACCGCTTCATCAAGCTAAAGGCAGAAAACCCTGACATGGCCCACAAAGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCTAACTTCCCCCAAAGTCAGTGGTGCAAAGGAGATGAAGAGAGTTGTAGCCAGACAGATCAACTTGTAGATGTTGACTCCAAAGTGGATCCTCCTGATACTGAGGTCAATGAAGAAGAAAATCAAGGTTTTCGTAAAAGAAAGATTCCAACAAATTCCATCTTGGAAAGGACACAGTTTGAATGA 417 0.4053 PKASSPEEDASKILNRHKAYMMTYSNCEVEGIIPMNNVVNKQKRQRTPSAYNRFIKLKAENPDMAHKEAFSTAAKNWANFPQSQWCKGDEESCSQTDQLVDVDSKVDPPDTEVNEEENQGFRKRKIPTNSILERTQFE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02510 138 SUPERFAMILY HMG-box 35 84 IPR036910 -
Pste2g02510 138 MobiDBLite consensus disorder prediction 101 138 - -
Pste2g02510 138 Pfam YABBY protein 18 83 IPR006780 GO:0007275
Pste2g02510 138 MobiDBLite consensus disorder prediction 103 129 - -
Pste2g02510 138 PANTHER PROTEIN YABBY 6-RELATED 32 94 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02510 Pste-Chr2 25372547 25373898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02510 21 138 C2C2-YABBY Transcription Factor Family AT1G23420 43.651 5.88e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste2g02510 YABBY 2.1e-21 CL0114