Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02490 ATTCAATTGACTCAGCTTCCTTCTCAAGTAGAATTGTTGATTTGTAGATCTTCTCTCGCAGTCCCATCTCAAGCACGCAGCAAAACACCAAATCCCAAATAAAACAGAAATTTTATTTATTTATTATCTATATATTTATTTTATTTTGTTTTTAGAAAAGTGGAGACCGAAATGGAATTTGACGAGCACGAGGACCAAGAGGAAGAGGAAGAGGAGGACGACGAAGAGGAAATGGGATTCTCAGTGGCGGCAACGGCGCCCGCCAGTTACGACTCACTTGGGAACGCGGTGGCCAGGTCCAAAATCGGCGGCGCCGACGGACTTCTACCCACCGTCAATTCCGGTCGCAAAGGCGGCTCTACCGGGACGGTCAGGTACAGAGAATGTCAGAAGAACCACGCCGTCAGCATCGGCGGGCACGCCGTCGACGGCTGCTGCGAGTTTCTTGCCGCCGGAGAGGAAGGCACGCTGGAAGCCGTAATTTGCGCCGCCTGTAACTGCCACCGCAATTTCCACCGCAAGGAGATCGACGGCGAAATCATCCCTTACCAGCCGCGTTCGCAGCCTCAGCCGCAGCCGCTGCACCCTCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCTGCACCGCCTTCCGCCGCAGGATACCTCCACCACCACCTGGTAACTCCTCCGGTTTCGCAGCACCGGCCGTTAGCCCTGCCACCGTTGGCTTCCGGAGGAATGTTCAGTAGGGAGGAAGAGGACATGTCAAACCCCAGCTCGAGCGGTGGCGGAGGCGGCGGTTTTAGTGGTGGAGGTGGTAGTGGGAGCGGAACAAAGAAGAGGTTTAGGACGAAGTTCACACAGGAGCAGAAGGATAAGATGCTTGCATTTGCGGAGAAGGTAGGGTGGAGAATTCAGAAGCATGACGAAGCTGCTGTTGAACAATTCTGCGCTGAAACTTGTGTCAAGAGACACGTGCTCAAGGTTTGGATGCACAATAACAAACACATCCTTGCTAATTCTGAGCAACGTTCAGCTGGGAATGGATCAAATCACATGAACAACTCAACAATAATTGCGAATTCTGAATTCTCCTAAGGGAGATTTAAGCAAATAAAGAGAAAGAAGTGAAGTTGGAAGTTGATGGAAGGGTTTGCAAGTGTTCATCTTATCAGGTGGATGGTGAGGAAGGGAGTATGCAGTGGAAGTATGCGGATGAGCACAGAGAATCAATTCCAACATTAGTTGTTATATTTAACGTGCGTGGAATGCAAGTGCAAAGCAGTTTATGTTACTCCTACTACTACTACGACTTTGCTGTGTTCCTTCACATTTGTCGTATTTTTCCTGTTTTTCCTCCCTAACACCGACCTAGTTTTAATTCTCGTTTCTCTCTCATATTAATGTCTCGTCCTCTTTCTTAGCTTCTGGACACAATATTTGGACCTCAAAGTTCACAAACCATTTAATGAGTCAAACAGATTCACGATCCATAAAACTGGAGTCACCATTTTCTTTTGGTCTGATTCAAACATCGCCATGTCATTCCCTTATTTTATGTTCCTTTTGACGTTATTTTCAGTTATTTGTTTCTGGGTTTTGTGAAGACTAGGTACAGCATCCTCCATTATTAATTGCTCTACGGATTTTCAGTTCATTTCTTCCCTTTATTATGTGTTCCGTCGCTGTGTTTAATTTTCTTTTTCTTATTTGTAATTTGTAATCTCTAAATGAAAAGAAAGTTTTTGGTGG 1740 0.4649 MEFDEHEDQEEEEEEDDEEEMGFSVAATAPASYDSLGNAVARSKIGGADGLLPTVNSGRKGGSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEIIPYQPRSQPQPQPLHPQYHHQFSPYYHRAAPPSAAGYLHHHLVTPPVSQHRPLALPPLASGGMFSREEEDMSNPSSSGGGGGGFSGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKVGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHILANSEQRSAGNGSNHMNNSTIIANSEFS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02490 304 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Pste2g02490 304 MobiDBLite consensus disorder prediction 1 22 - -
Pste2g02490 304 FunFam Zinc-finger homeodomain protein 2 211 279 - -
Pste2g02490 304 Gene3D - 207 281 - -
Pste2g02490 304 SUPERFAMILY Homeodomain-like 205 275 IPR009057 -
Pste2g02490 304 Pfam ZF-HD protein dimerisation region 67 119 IPR006456 -
Pste2g02490 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 276 - -
Pste2g02490 304 MobiDBLite consensus disorder prediction 1 28 - -
Pste2g02490 304 MobiDBLite consensus disorder prediction 171 219 - -
Pste2g02490 304 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Pste2g02490 304 MobiDBLite consensus disorder prediction 282 304 - -
Pste2g02490 304 NCBIfam homeobox domain, ZF-HD class 218 274 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02490 Pste-Chr2 25215735 25217795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02490 15 277 ZF-HD Transcription Factor Family AT4G24660 49.438 5.35e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste2g02490 ZF-HD_dimer 2.9e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02490 2 25215735 25217795 Pste2g02490 2 25215735 25217795 ECH
Pste8g01802 8 12525606 12527465 Pste2g02490 2 25215735 25217795 PCT