Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02486 TCTATCTCAAGAACAAAATCATGTCTCACATAGCTGTCGAGAGAAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCGTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATTGGGGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGTCCTGCTCCGAGTCCACGGACACTGCAACCAACTTTTCATCAACTTGATAGCTCCTCCATAATTGGGACTAGTTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCGGATGTTGAAGTCAAAATCTCGGGTCCAAATGTGATCTTGAAAGTAATTTGCCACAGAATTCCAGGTCAAGTTGCTAAGATCATAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAATTTGTGGTCAAGATAGAGCTGGGATGTCAACTTAGTCTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTCAGACGCTATGACTGTGCTGTGATGTTGTAGCATTTCAAAAGAGACCCAATTTCCAATCGTGTGTTAATAAAAGAAAGGCATGAGATAGACATCATAAAAACCTTTTCTTTAGTTACTGCAAACTAGGGTTATTATACCATGTCATAAACTTCATGACATGGAAAATATCATGTTTAATTATATTAGTATCTGTAATATATATGAACTCAATGGTTCCAAACACTCTAACTCATGGATGCGAACAGAAG 822 0.3905 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPAPSPRTLQPTFHQLDSSSIIGTSSFKELGASCNSSVADVEVKISGPNVILKVICHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSDAMTVL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02486 191 CDD bHLH_AtFAMA_like 1 63 - -
Pste2g02486 191 Gene3D - 1 64 IPR036638 GO:0046983
Pste2g02486 191 SMART finulus 4 55 IPR011598 GO:0046983
Pste2g02486 191 FunFam Transcription factor MUTE 1 66 - -
Pste2g02486 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Pste2g02486 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Pste2g02486 191 MobiDBLite consensus disorder prediction 60 79 - -
Pste2g02486 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 183 IPR044283 GO:0003700|GO:0010052
Pste2g02486 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 69 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02486 Pste-Chr2 25150385 25152244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02486 1 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.169 3.24e-87 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g02486 HLH 4.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02486 2 25150385 25152244 Pste2g02486 2 25150385 25152244 ECH