Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02482 GAAAGAAAGAAAAAAGTGGAGTGAAATGAAATGAATTTAATAAGAACATTTTGTGACAGAAGAGGAGGAAGTCTGTTTCATCTTGACAAACATCCTTGTTCTTTCTGAAAGGGGTGATTCTGAACTAAACATGGGTATCTCGTGGAGTGGAAGAAGAAGAAACAATTACCTCCAAAATCCCCCACCTCCACCCACCACTTACTTTTACCCACACGAATCCCACCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCCCCCCCCGCCCCCCGCAAGGCTACTTTCTCCCTTCGACCAGCCCCTACGGCCCTCACTGCCCCAACTACGGCAGTCCCCAGACCCATTCGATTTCCTTCTATTACTCCAACCCCAATGCGTACCACAACTACGCCAATCGTCTTCACTACCAGCCTTTCTACCAACCTCAGCCTCCGCCTCCAACTGCCGCCTGGCCCGCCACTCGTGCCTCCGCCTCCGCCTCCATTCCCCCTCCCTATGTCGACCACCAGACCGCCAAGAAGATCAGAAACTATGTCAATGTCCATAAGGACACCCTTCAGCTCCAGGTTGACCTTGATTACCCCGATCATCATCTTCTTTCCTTCGTTTTCGATGCTGTCTATGATGGCAGCATTACTATCTGCTACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTATTACCTGATGCATTTCAGCCAATCAGAATTCCCTTTCAGAAAGGAGTAGGCCAGAAATTTTCTCAGCCTTCAGGAACTGGAATTGACCTAGGCTTCTTTGCATTGGATGATCTTTCAAAGCCCTCACCTGGTGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACAAGTTTGAAAGCACCCTCAGAAGATGAAACCCCTGGTGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGATGGTTCTTTCCTAATAAAAGTAGTTAGGCAAATTTTGTGGATTGATGGTGTTAGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCTTCTGCAGCTGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGACTTCGAACCAATAAATGCCCTATATGCCGTCAGCCTATTGAAGAACTTATAGAGATCAAGGTGAACAATGGAGATCAATGAGATTTTTTTTCTTCTGATGCAAAGTATCATGACATTCTCAATAAATTCCCTTTAAGAAAATTCTCCCCCTTTTTACATGTCTGCAGCCTGGTATTATATAGGAATTTCTTTTTTGTAAATTGTAGTCAATAATCTGTTTATAGTTTTTGTGTGATGTGTTCGAGGGAAAATTAGATCATCGGTGATTGAATGTTTCCTCCCGTGTCATCTATATTGTACAGTTGATGATAATTTTTCTGTACTTTATGTCTTAATGGTGTTTAAGAGATCATTTGCCTAATGTTTGGCTAAACAAGAGAAATATGAACTAACACCTGGTTTGATACATAATGAATTATGTTTGAAAGTTATCA 1611 0.432 MGISWSGRRRNNYLQNPPPPPTTYFYPHESHPPPPPPPPPPPPPRPPQGYFLPSTSPYGPHCPNYGSPQTHSISFYYSNPNAYHNYANRLHYQPFYQPQPPPPTAAWPATRASASASIPPPYVDHQTAKKIRNYVNVHKDTLQLQVDLDYPDHHLLSFVFDAVYDGSITICYFAKEEEKCRFVPLLPDAFQPIRIPFQKGVGQKFSQPSGTGIDLGFFALDDLSKPSPGEDVFPLVICAETSLKAPSEDETPGDSLLDASPHMQITQGVLEKSNGDGSFLIKVVRQILWIDGVSYELRELYGIGSSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLRTNKCPICRQPIEELIEIKVNNGDQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02482 375 PANTHER MAHOGUNIN 86 370 IPR045194 GO:0061630
Pste2g02482 375 FunFam probable E3 ubiquitin-protein ligase LOG2 304 369 - -
Pste2g02482 375 Pfam Zinc finger, C3HC4 type (RING finger) 318 364 - -
Pste2g02482 375 MobiDBLite consensus disorder prediction 14 53 - -
Pste2g02482 375 MobiDBLite consensus disorder prediction 1 64 - -
Pste2g02482 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 369 IPR013083 -
Pste2g02482 375 SUPERFAMILY RING/U-box 319 365 - -
Pste2g02482 375 SMART ring_2 320 358 IPR001841 -
Pste2g02482 375 CDD mRING-HC-C3HC5_MGRN1-like 318 359 IPR045195 -
Pste2g02482 375 ProSiteProfiles Zinc finger RING-type profile. 320 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02482 Pste-Chr2 25076556 25081717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02482 122 375 C3H Transcription Factor Family AT3G06140 62.745 6.58e-109 322