Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02425 AGTGATGCACATGCTCCTATTGATGATTTGGATGTTCTTCCTATTGATGATGATGAAGGAATTGAAGTGGGAATGAGACATCCCAATGCCAATGAAAATGATGATTATATAGATGACAATTGTCAAGATGAATTATATGCTTTCTTAAAAACTAGATTTAACAACTTGAAATACGTACCAGTCTCTGAGGCCATTGAAGCAGACTACCGGCGGAAGCACAAAGCTACTACCGCCATAGTAATACCTCATTTTTACAGGTATTATATATCATCCCCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATCGATAATGGCATAGTCCAGGTCAACTTATCGAATCCTGAAGGAATTGTGACGGGAATTCAATATAATGGCATCGACAATTTGCTGGAAGTTCTGAACGATGAATCTAACAGAGGGTACTGGGATATCGTATGGGACCAAGGAGGGGAGAAAAGAACCAAAAAAGGAGCAAAGGGGAAGGGTAGATTTGACAGGAAAATGATGTACAGAATGGAAGGCACGAATTTGACGGTGATAGTGAACAATGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGCTTCTCTTGAGGGGAAGCTTCCGCCACTCAATATCGATAAAAGGTTTGTAATGCTTCGTGGTTCATCCGGATTCTACACATATGCCATTTACGAGCATTTGAAGGAATGGCCAGCGTTCGATCTTGACAACACTAGGATAGCATTCAAGCCTAGGAAGGACAAGTTCCATTACATGGTTGTAGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACAGGTCACCACCAAGAGGTCAGGTTCTGGCCTACCCTGAGGCTGTGCGCCTTGTTGATCCGGTTGAGCCTCACTTCAAAGGAGAGGTAGATGACAAATATGAGTACTCGTGCGAGAGCAGAAACAACCATGTTCACGGTTGGATGAGCATTGATTCATTGAATTCCACTGGATTCTGGCTGATTACGCCAAGCTATGAATTCCGATCGGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTGGGCCCAACCACACTTTCTGTATTTCATAGCACGCATTATTCAGGGGCGGATCTTATAATGAAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATCTATATACCTCAACTCTCAATCTAACGGCTTTAGCCCAACCAAGCTCTGGGAGGACGCCAAACAACAAATGGTGAATGAAGTTGAAAGCTGGCCCTATAAATTCCCAGCTTCCAAAGACTTTCTCTCATCTGAACAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGCGATGCATTTATCCCAGTTAGCGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGCAAGGGTTATCAATTTTGGACCATGACTGATGATAAAGGATTTTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATAAATTCGATCGAGTCATCAACGTAACTTCAGGTTGCAAAATTGATGTGGGTGAGCTAGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCAATATACATTAACAGACTTTATGTTAACCATTCAGAAAGGTATAGGCAATATGGCTTGTGGGAGAGATATGCTGAATTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTACCAGGAAGAAAGATAATTACACGTACCAAGGAACGACATGGCAAATTAAGTTCAAGCTTGATAGTGTGAATACCAATTGGACCTATATATTGCGAGTGGCTCTGGCATCTGTGCATGGTGCTGAATTAGAGATTAGGATAAACAAAGTAGACGCAAATCCAGGTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATAGTATAGCTAGACATGGAATTCACGGACTCTACTGGCTATTCAGCATTGATATACAAGGCAGTCTTCTTGTGCAGGGAAACAATACCATCTTTCTAACGCAACTACAAAACAAAAGTCCTTTTATAGGAATTCTGTATGACTATATTCGTTTAGAATACAAACGGTCAACATCTTAA 2220 0.4198 SDAHAPIDDLDVLPIDDDEGIEVGMRHPNANENDDYIDDNCQDELYAFLKTRFNNLKYVPVSEAIEADYRRKHKATTAIVIPHFYRYYISSPGVRLDIQDKHVIIDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDQGGEKRTKKGAKGKGRFDRKMMYRMEGTNLTVIVNNEEQVELSFTRTWNASLEGKLPPLNIDKRFVMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPVEPHFKGEVDDKYEYSCESRNNHVHGWMSIDSLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMKFGPNEPWKKVYGPISIYLNSQSNGFSPTKLWEDAKQQMVNEVESWPYKFPASKDFLSSEQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTMTDDKGFFSIINIRPGDYNLYSWVTGYIGDYKFDRVINVTSGCKIDVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPIYINRLYVNHSERYRQYGLWERYAELYPNEDLVYTVGVSDYRKDWFFAQVTRKKDNYTYQGTTWQIKFKLDSVNTNWTYILRVALASVHGAELEIRINKVDANPGLFSSGVIGKENSIARHGIHGLYWLFSIDIQGSLLVQGNNTIFLTQLQNKSPFIGILYDYIRLEYKRSTS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02425 739 Pfam Rhamnogalacturonate lyase family 96 302 IPR010325 -
Pste2g02425 739 CDD RGL4_N 99 397 - -
Pste2g02425 739 Pfam Polysaccharide lyase family 4, domain III 544 732 IPR029411 -
Pste2g02425 739 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 99 734 - -
Pste2g02425 739 SUPERFAMILY Starch-binding domain-like 434 531 IPR013784 GO:0030246
Pste2g02425 739 FunFam Rhamnogalacturonate lyase B 432 531 - -
Pste2g02425 739 CDD RGL4_M 435 534 IPR029413 -
Pste2g02425 739 Pfam Polysaccharide lyase family 4, domain II 458 530 IPR029413 -
Pste2g02425 739 CDD RGL4_C 546 733 - -
Pste2g02425 739 Gene3D - 96 383 IPR014718 GO:0030246
Pste2g02425 739 Gene3D - 432 531 - -
Pste2g02425 739 SUPERFAMILY Galactose-binding domain-like 541 734 IPR008979 -
Pste2g02425 739 Gene3D - 542 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02425 Pste-Chr2 24404179 24415288 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02425 94 733 Polysaccharide Lyase AT1G09890 65.163 0.0 862