LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02424	AGGGATAAAGTAAAACGTCTTTCGTTCCGAGACACTCATCTATGTGTGTCTTCCTTCCTCTGCGCTTCACCAACAAGTTCCAAAATTAAAATTGTAGTATATAGTAATAGTAATAGTAATAGTAATAGTAAGAAACAGAAGCAGAAGAGGAAGATGTTGGTGACTGAATCGGGTGGTTCAAAGGTGGACATTCCGGAGGAGCTGCTTAAAGTTCTACCGTCTGATCCTTACGAGCAGCTGGATGTGGCACGCAAGATCACCTCCGTTGCGCTGTCCACACGTGTGAACGAGCTCCAATCAGAGTCCTCCACTCTACGCGCCGAAGTCGCCGAAAGGGACCGGCTCATCGCCGACCTCCAGGCTCAGCTGGCCTCCATCGATGGCTCCCTCGCCGAAGCCGCCGAGAAGCTCGCCCGAGCCGACCATGACAAGGAGAGTTTAATGAAGGAGAATACTTCGCTTTCCAACACGGTGAGAAAGCTGAGCAGAGATGTGGCCAAGGGAGAAGCGCCGGACATTGTCGCCAAGTTGCAAAGTCAAGCAAGTTTCACTTCCACATCGCAATTTGGAGATGAGGATTCTTCAACGCTTTCAAGATCTTCTTCAATGCGAATAAACACGGAAAATGCTTTGGCAGAGGATCTTGCAGGGTCAAAATGTGGAGCACCACATAATCTCCTCTTAGCATCTCAAAGTAGCACCCCTCGAATTACTCCCCCAGGTTCCCCTCCTAGTATGTCAGCGTTGGTATCCCCATCAAGAACATCGTCTAAGCCTGTGTCTCCAAGGCGCCATGCAATGTCCTTTTCAACCTCAAGAGGAATGTTTGATGATAGGTCTTCAGTAGGATCACAAACTGGACGAACACGGGTGGATGGAAAAGAGTTTTTTCGCCAAGTTAGGAGTCGTTTATCTTATGAGCAGTTTGGTGCATTTTTAGCAAATGTTAAGGAACTGAATTCTCACAAACAAACCAAAGAGGTAACCCTCGGCTTCCTTCCCTCTTCCCATGCTACCCCATATGTATCTGAATTTCAGTTAATTGCCACATTTATGTGTGTGTCTGTGAATGTGAAATTGCAGGAAACACTACAGAAAGCTAATGAGATATTTGGGCCTGGAAACAAGGACCTCTATGCTATATTTGAGGGATTGATAATGCGCAATAAAAATGATGCGAACCGCTACTTTGATGCATCTTTCTCTTTCTGTTCCTCTATGACTCTATATGCATGCACGTCATTCCCGTGGCTACCCTTTTGGTTCTCGGAAACTCCCTTGGCCACCATGAACGATGAACGAGAACCACAAGCCTCCCCGAGCAATAGCGTCCACAAGATAGTAAAAAAACAAATGACTGAAAGGGAGAAATCCATTTTTAAAGGCAGACGTCCACGAACTGGGTTTTCTGATTCATTTTCAAGTATTGACATCGAAACTTTAGACATTGAAGAGGGAGGGCTACGTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCTAGTTCCAGAGCCAGCACTTCTGATTCAGAGAGTCAGGGATCTTTAGTAGGCACACCTAACAATAACCAATGGCGTGGGTTCTTTAAATTACTTAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAACTGACAAGAAGAAAAAGCAAGAGAATAAGGGAGGACCTCATTCCATCTCTGAATTCTCCAGCTCTTCAGTCATCTTTTGACACTGAGTTTGGCTGCTTCAAAACTTCCTGGAAAAACTTCACGCTTGCTGAGATCGAGGCTGCAACCGATGAGTTTAGCGATGAAAATTTGATTGGGGAGGGAGGCTATGCCGAGGTTTATTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATAATAGTGCACGTCGACCACCCCAACATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCCTGTCATCCATACTTTATGGACCTAGAGAGAAACTTGATTGGAGCCTCAGATATAAGATTGCTTTGGGAACTGCTGAGGGCCTTCGCTATCTGCATGAGGCGTGTCAAAGAAGAATAATTCACAAAGATATCAAGGCTTCTAATATTCTGCTCTCAGAGGATTTTGAGCCCCAGATATCTGATTTTGGGCTTGCAAAATGGTTACCTGACCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCAGAATTCTTCATGCATGGTATAGTAGATGAAAAGACAGATGTCTATGCTTATGGCGTGCTATTATTGGAGCTCATTACTGGTAGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGTGTTAGATATACTAAGAGGGGACGAAGATAGCTTAAGAATCGTGAAAGAACGAGCGAAATCAAAACTTCAGAGGACATACTCTGAAGAACTCTTAGATGCAGAAGAGTACAACTCAACAAAGCTTTTGAGTGAGAGGGATCGACATATGGAGACTATTCTAGGCTGCGATAGCTCTGTTACAGATGAAGAAGGAGATAATATCTAGCGTATGGGGTGTCTGTGAATCAGATATGTGTGTACATGGAACTACAGAAGTTGAAAATTGAACTTAAAGAGCACATTTTGATAGACGATCTAGAGCTGTACAGAGCATGGATTGAAGGGGTTAACAAAGACACCGAAGAGGCATAACCTCGTGTGGATGTAGCATGTTTGTCAATAGTTTTATTAGTCAAAGTGATCATGAAATTCTGCTATACTTTCTGAAGCCAAATTAAAGCCCTGATGGTTGCCTTAGATGAGGATTACCCATTTCCACGAAGCGTCAATGATCATCATCTCCAAATACCATTTTCAGCAAGTTGTTTAATTTCTGTTGTAACCAGAAAATTTCCATAATTTCTTCGATTTGTGTTAAGTGATTTTTATTAATATATCTCATCCGTAGTGTTACTGCTGGGACA	3064	0.4351	RDKVKRLSFRDTHLCVSSFLCASPTSSKIKIVVYSNSNSNSNSKKQKQKRKMLVTESGGSKVDIPEELLKVLPSDPYEQLDVARKITSVALSTRVNELQSESSTLRAEVAERDRLIADLQAQLASIDGSLAEAAEKLARADHDKESLMKENTSLSNTVRKLSRDVAKGEAPDIVAKLQSQASFTSTSQFGDEDSSTLSRSSSMRINTENALAEDLAGSKCGAPHNLLLASQSSTPRITPPGSPPSMSALVSPSRTSSKPVSPRRHAMSFSTSRGMFDDRSSVGSQTGRTRVDGKEFFRQVRSRLSYEQFGAFLANVKELNSHKQTKEVTLGFLPSSHATPYVSEFQLIATFMCVSVNVKLQETLQKANEIFGPGNKDLYAIFEGLIMRNKNDANRYFDASFSFCSSMTLYACTSFPWLPFWFSETPLATMNDEREPQASPSNSVHKIVKKQMTEREKSIFKGRRPRTGFSDSFSSIDIETLDIEEGGLREHSPRSQGSETPSSRASTSDSESQGSLVGTPNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDTEFGCFKTSWKNFTLAEIEAATDEFSDENLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLDWSLRYKIALGTAEGLRYLHEACQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWVLDILRGDEDSLRIVKERAKSKLQRTYSEELLDAEEYNSTKLLSERDRHMETILGCDSSVTDEEGDNI	881

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g02424	881	ProSiteProfiles	Protein kinase domain profile.	603	881	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02424	881	SUPERFAMILY	Protein kinase-like (PK-like)	588	810	IPR011009	-
	Pste2g02424	881	MobiDBLite	consensus disorder prediction	181	202	-	-
	Pste2g02424	881	SMART	serkin_6	603	856	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02424	881	MobiDBLite	consensus disorder prediction	247	287	-	-
	Pste2g02424	881	Gene3D	Transferase(Phosphotransferase) domain 1	680	864	-	-
	Pste2g02424	881	MobiDBLite	consensus disorder prediction	484	521	-	-
	Pste2g02424	881	MobiDBLite	consensus disorder prediction	493	521	-	-
	Pste2g02424	881	MobiDBLite	consensus disorder prediction	231	287	-	-
	Pste2g02424	881	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK2	573	677	-	-
	Pste2g02424	881	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	722	734	IPR008271	GO:0004672\|GO:0006468
	Pste2g02424	881	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	680	858	-	-
	Pste2g02424	881	PANTHER	OS08G0249100 PROTEIN	439	841	IPR046958	-
	Pste2g02424	881	MobiDBLite	consensus disorder prediction	37	57	-	-
	Pste2g02424	881	Pfam	Protein kinase domain	604	844	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g02424	881	Coils	Coil	116	164	-	-
	Pste2g02424	881	Gene3D	Phosphorylase Kinase; domain 1	568	677	-	-
	Pste2g02424	881	ProSitePatterns	Protein kinases ATP-binding region signature.	609	631	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02424	Pste-Chr2	24390263	24404004	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g02424	574	838	Receptor kinase-like Gene Family	AT1G53420	40.293	3.43e-57	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Pste2g02424		Pkinase	4.1e-39	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g02424	2	24390263	24404004	Pste2g02424	2	24390263	24404004	ECH
	Pste6g04222	6	31481826	31485236	Pste2g02424	2	24390263	24404004	PCT