Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02421 ATCGGTAACCCCATGAAATCTCTCACTGTATACTCCCTTGTCTAATCACCACCGTTTCATTTTCACCCATTTCCGGAGGTATCTGAAATTTGTAGACATAATTACAAGTTCAAGAATTATTCATACTATCAGTAAAAAGTAAAACAAGGGTTCACCATGTCCGCCCCAGGGGTACGGTTGCATATCCAAGATCACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGATGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGTCTAATAGAGGGTACTGGGACCTTGTCTGGAGTGCGCCAGGAAGCAAAGGAATCTTTGATGTGTATGGCAATACTACTTTCTTTCATAACTGCATGGTGTATTTGATATTACTCCAACAAGTCAAATTCTCAATAAATATATATTCAAACACATTTGCCGATTTGAGTTGCAATTATATTGGGAGTGGTTTTTATATAACATTTGAAGCACATGTGAACTCAAGATGTTATGGTCCAGGATTAAAGGAACTTCAAAATGAGGAGCAACTGGAGATTTCATTTACAAGAATGTGGGATCCTTCTTTAGAGGGAAAGTTTGTTCCCTTAAATATTGACAAAAGATTCATAATGCTCCGAGGTTCATCTGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTGGTGAAACGAGGATAACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTGTGGCAGACAATAGGCAAAGGATTATGCCTTTTCCGGAAGATCGGTTATCAGGAAGATGCCAAACCTTGGCGTACCAAGAAGCTGCTCTACTAGTCAATCCCAAGGATCCACGATTGCAAGGAGAGTATTCATGTATAAACATGGATAATCAAGTCCATGGGTGGATATCTTTCAGTCCACCAGTAGGATTCTGGCAGATCACGCCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCTCATGTAGGCCCCACGACACTTGCAATGTTTCTTAGTAGTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAACCATGGAAGAAGGTTTTCGGTCCTGTATACATTTATCTTAATTCTGGAGCAGTTGGTGATGATCCACTTCACCTATGGCAGGATGCAAAAATACAGATGATGAATGAAGTTCAGAGTTGGCCATATTCTTTCCCAGCTTCAGAGGATTTTTTAAAGTCTGATCAACGTGGCAATGTCAGTGGCAGATTACTTGTCTTAGACAGGTATGTCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTTTAGCCCCGCCTGGAGATGCGGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCCGAACAGACGAAAATGGATTTTTCACTATTAGAAATGTACGCCCGGGTGACTATAATCTTTTTGCTTGGGTACCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTTATGAAGATGACATCAGGTTCTTACATTGAATTGGGTGAACTTGTATATGAGCCCCCAAGGGAAGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCAGAATTTCATGCTCCTGATCCCAATCCACCTCATATTAATAAGCTTTTTATCAACCACCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTACACTGAATTGTATCCTGATGCAGATTTGGTTTACACAGTTGGTGTTAGTGACTATACGAAGGATTGGTTTTATGCACAAGTTCCGAGGAAAAAAGAGGATAATACTCTTCAAGGAACAACTTGGCAAATCAAGTTCGAAATTAGTAGTGTGGTTCAAGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGGAGACCACTATTTACCAGTGGATTAATAGGAAGGGACAATTCAATTGCAAGACATGGAATTCACGGAATCTATTGGCTGTACAATGTGAATATACCGGGTTCTCTTCTTATTACTGGCACAAATACCTTATATTTTACGCAACCAAGATGCACCAGTTCCTTTCAAGAATATAAATATCTTTCAACATTATACGTGATGATGGACAACGGCATACTAAAAGTCACCTTGTCAAATCCCGGTGGAATTGTGACAGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATCAAGAATCAAATAGAGGGTATTGGGACCTTGTTTGGAGCACACCAGGAAGCAGTGGTAGTACGTTTGATGTCATAAAAGGAACAAGTTTCCAAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGGTGTGGGACGTCTCTCTCCAGGGCAAGATGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCCTACGCAATTTATGAGCACTTGGAGCAGTGGCCTGCTTTCAACCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCGGATGATCGATTAGCTCCTAGGGGCCAAGCCCTTGCCTACCCAGAGGCAGTTCTACTTGTCAATCCCATTGAACCCGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAACCAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGGTCATTACGCCCAGCAATGAATTTAGATCTGGTGGACCCGTCAAACAAAACTTAACTTCACATGTGGGCCCTACCACGCTCGCTATGTTTCTGAGTGCTCATTATTGCGGAGATGATCTGATTCCTAAGTTCAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTTCCTACGATGGAGGTGACCCCCTTAATCTATGGAACGACGCTAAACAACAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGTGGATTTCGCAAAGTGGGACGAGCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGATAGTTATATAGACGATGGCTATATATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTCTGGGCTAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCGGGAGACTATAATGTGTACGCGTGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACGTAACAGAGGGTTGTGACATCGACCTTGGTGAACTTGTATATGAACCTCCAAGAGATGGTCCAACTTTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACACAAATCCCAAATATATCAACAAACTATATGTTGATCACCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCGGACAAGGACTTGACCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATTCCACATATCAAGGAACCACATGGCAAATCAAGTTTAAGGTTGATAAGGTGAACGAAAGCAGTAGCTATAAACTGCGAGTGGCTTTGGCATCATCGACATTATCTGAACTTCAGGTTCGAGTGAATAATCAAAAGGCAAGTCGTCCTCTATTTTCAAGTGGGTTGATTGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTCAATGGCTATACAATGTAGACATACCTGGAACTCAACTAGTTGAAGGAGATAATACCTTATTTTTGACACAGACCAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCACCATCTTCTAGCTTCAAAAACAATATTTGAGAAATTTTCTGTTTTACTAACAATATTTAATCAAATACGACGAATAAATATTGGGAATAAAGAGG 4130 0.4121 MSAPGVRLHIQDHHVVMDNGIVQVTLSNPDGIVTGIRYNDVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVYGNTTFFHNCMVYLILLQQVKFSINIYSNTFADLSCNYIGSGFYITFEAHVNSRCYGPGLKELQNEEQLEISFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLGETRITFKLRKDKFQYMAVADNRQRIMPFPEDRLSGRCQTLAYQEAALLVNPKDPRLQGEYSCINMDNQVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGAVGDDPLHLWQDAKIQMMNEVQSWPYSFPASEDFLKSDQRGNVSGRLLVLDRYVCTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRTDENGFFTIRNVRPGDYNLFAWVPGFVGDYKFGDFMKMTSGSYIELGELVYEPPREGPTLWEIGIPDRSAAEFHAPDPNPPHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTVGVSDYTKDWFYAQVPRKKEDNTLQGTTWQIKFEISSVVQGSTYKLRVAIASATLAELQIRINDPNARRPLFTSGLIGRDNSIARHGIHGIYWLYNVNIPGSLLITGTNTLYFTQPRCTSSFQEYKYLSTLYVMMDNGILKVTLSNPGGIVTGIQYNDIDNLLEVLNQESNRGYWDLVWSTPGSSGSTFDVIKGTSFQVMVENEDQVELSFTRVWDVSLQGKMVPLNIDKRFVMLRGSSGFYSYAIYEHLEQWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLAPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNQVHGWICMDPAVGFWVITPSNEFRSGGPVKQNLTSHVGPTTLAMFLSAHYCGDDLIPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLNLWNDAKQQMLVEVQSWPYSFPESVDFAKWDERGNVSGRLLVRDSYIDDGYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNVTEGCDIDLGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDTNPKYINKLYVDHPDKFRQYGLWERYAELYPDKDLTYTVGVSDYTKDWFFAQVTRKKDDSTYQGTTWQIKFKVDKVNESSSYKLRVALASSTLSELQVRVNNQKASRPLFSSGLIGRDNSIARHGIHGLQWLYNVDIPGTQLVEGDNTLFLTQTRGNGPFQAIMYDYIRLEGPPSSSFKNNI 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02421 1302 SUPERFAMILY Galactose mutarotase-like 680 954 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pste2g02421 1302 Gene3D - 485 679 - -
Pste2g02421 1302 Gene3D - 1100 1291 - -
Pste2g02421 1302 Gene3D - 992 1086 - -
Pste2g02421 1302 Gene3D - 375 459 - -
Pste2g02421 1302 SUPERFAMILY Galactose mutarotase-like 178 343 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pste2g02421 1302 Pfam Rhamnogalacturonate lyase family 670 862 IPR010325 -
Pste2g02421 1302 Pfam Rhamnogalacturonate lyase family 9 78 IPR010325 -
Pste2g02421 1302 Pfam Rhamnogalacturonate lyase family 136 252 IPR010325 -
Pste2g02421 1302 Pfam Polysaccharide lyase family 4, domain II 401 472 IPR029413 -
Pste2g02421 1302 Pfam Polysaccharide lyase family 4, domain II 1016 1088 IPR029413 -
Pste2g02421 1302 CDD RGL4_M 993 1092 IPR029413 -
Pste2g02421 1302 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 136 670 - -
Pste2g02421 1302 SUPERFAMILY Galactose-binding domain-like 1099 1291 IPR008979 -
Pste2g02421 1302 FunFam Rhamnogalacturonate lyase B 375 474 - -
Pste2g02421 1302 CDD RGL4_N 6 339 - -
Pste2g02421 1302 SUPERFAMILY Galactose-binding domain-like 485 665 IPR008979 -
Pste2g02421 1302 SUPERFAMILY Starch-binding domain-like 421 455 IPR013784 GO:0030246
Pste2g02421 1302 FunFam Rhamnogalacturonate lyase B 990 1089 - -
Pste2g02421 1302 CDD RGL4_N 674 963 - -
Pste2g02421 1302 SUPERFAMILY Starch-binding domain-like 1036 1083 IPR013784 GO:0030246
Pste2g02421 1302 CDD RGL4_C 489 670 - -
Pste2g02421 1302 CDD RGL4_C 1104 1291 - -
Pste2g02421 1302 Pfam Polysaccharide lyase family 4, domain III 487 668 IPR029411 -
Pste2g02421 1302 Pfam Polysaccharide lyase family 4, domain III 1102 1290 IPR029411 -
Pste2g02421 1302 CDD RGL4_M 378 477 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02421 Pste-Chr2 24372923 24386841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02421 1 670 Polysaccharide Lyase AT1G09890 62.094 0.0 840