Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02411 TTTGGAGAGGGCGCGTGAAAGGAAAAGGAGAGCGCGTAGGGGAGAAAACTTGCAAATGTGGCCACGATGACCCCATCGATCATCAGAAAGAAGAAAGCCGCCGTTTCTTCCATTCTCCGCCAAACATCCAACGACCCCTAACAAACACTGCAAGACTACAATTGAATTAGGGTTTCCAATTTGGAAAATCCAAAATCCATGGAACCCCATTCTCCCCCTCCCTCCATGGATGACATCGAAGACCCTTCATCGATTTGGGACTTCTCCTACCTACTTGACTTCAACCTCGAAGAAGAAGACACCAACTCTCTCCTTCTGCCGTTAAGCGACCCCCCCGAGATCCCTCCAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACCTGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGTGCATGTCCCGAACTCGACGCCAAGCTCGAGGACGACGGTTTGCCCGGCAAGAAACGCCCCCGCACCGCCCGTGCTTCTGCTTCTTCTCGATGCCAGGTCCCTGCCTGCCAACTCGACATCTCCGAACTCAAAGGCTACCACCGCCGACACAGGGTTTGCCTCCGCTGCGCTAATGCCGCCACCGTTATGCTCCACGGCGAGCCCAAGAGATACTGCCAACAGTGCGGAAAGTTTCACGTTTTGTCCGATTTCGACGAAGGCAAACGCAGCTGTAGAAGGAAGCTAGAGCGCCATAACACCAGAAGGCGCAGAAAGCCTCCACCCGAATCTGGAGGTGCTGCTTGTATCGAAATTGACCCTGTTACTCTAAACGAGGAAAACAGTTATGATGCGGAACCACCAAAAGATTCTTCGAATTTGAGTACCGAACTCAATGACAAAGAAGCGTCGCCGGATCGTGAAGACCAACCGGTTCCCATTATGATCTCGCCTCCTGATGCCCAGAACATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAACAAGAGTGCCTATTCCACTATGTGCCAAACAGGTCGGGTTTCATTTAAGCTTTATGATTGGAATCCAGCCGAGTTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTAGAGTTGGAGGGGTATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACGTTATGTGGATAAATTTACTCAATGACTCTTTGGAATATGTGCACAATCTTGTTGCTCCTGGGAAGATGCTATCTGGAAGAGGCACCAGACTAGTGCATCTGAATGATGTGATCTTCCATGTTATGAAAGGTTTTTTGCTGTTTTGTTTGTTCACTATGGTGCTTATCCTCCATCTTAGAGACGCACCAAAGCTACACTATGTTCATCCCACATACTTCGAGGCTGGCAAACCTATGGAGTTTGTTGCCTGTGGAAGTAACTTACAGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTAAAATGTGAGTACTGTGTACCATCTCCACATAACTGGACTGAAGACAACATTTCTTGTGCTTTTAACAATCAGTTATACAAGGTATACATCCCTCATACAGAGGAAAATCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGTACCGAAATGAAGACAGTGCAGCAAAAATTAGATGTATCTCTTCTTTCTAAATTTCAGTCTGCATTTTGTGGTTCTGTCTGCAGCTTATGTAAAGCTTTTGCACTTAATCATGCATCATCATCAGACTTACTTTTAGATATAGCATGGTTGCTTAAGGACACTAGTTCAGAAAATTTTGACAGAGCGATGACAGCTTCACAAATTCAAAGATATTGTCATTTGCTGGATTTTCTGATATGCAATGATTCAACGATAATTTTGGGGAAAATATTACCAAATTTGATAATCTTGACAGAAGGCATGAAATCGAATATTGTGATTAATTGGACGAGTGATGCTGACTTTACTCAACTTCTAAATCACATAGATAATGCTAGAAATGCTATATGTCAGAAACATCAGAAAGGTGGAGGTATAATTGTGCACTCTGAAATGGAAGACTCTAAACTTGCTCATAAATGCTCCGAAAATAAGAAGCTATCAGTTGCAGTTAGCAGTCAGGTTAGGACTATTATTTTTCTTAGTTTTCTTATCTCTGATGATGAAATACTAACACATTTTGAAGTTTTAGATTAA 2289 0.4421 MEPHSPPPSMDDIEDPSSIWDFSYLLDFNLEEEDTNSLLLPLSDPPEIPPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEDDGLPGKKRPRTARASASSRCQVPACQLDISELKGYHRRHRVCLRCANAATVMLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPPESGGAACIEIDPVTLNEENSYDAEPPKDSSNLSTELNDKEASPDREDQPVPIMISPPDAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSTMCQTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNVMWINLLNDSLEYVHNLVAPGKMLSGRGTRLVHLNDVIFHVMKGFLLFCLFTMVLILHLRDAPKLHYVHPTYFEAGKPMEFVACGSNLQQPKFRLLVSFSGKYLKCEYCVPSPHNWTEDNISCAFNNQLYKVYIPHTEENLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTVQQKLDVSLLSKFQSAFCGSVCSLCKAFALNHASSSDLLLDIAWLLKDTSSENFDRAMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTEGMKSNIVINWTSDADFTQLLNHIDNARNAICQKHQKGGGIIVHSEMEDSKLAHKCSENKKLSVAVSSQVRTIIFLSFLISDDEILTHFEVLD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02411 696 ProSiteProfiles Zinc finger SBP-type profile. 101 178 IPR004333 GO:0003677
Pste2g02411 696 MobiDBLite consensus disorder prediction 169 240 - -
Pste2g02411 696 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 85 584 IPR044817 GO:0003677
Pste2g02411 696 SUPERFAMILY SBT domain 103 180 IPR036893 GO:0003677|GO:0005634
Pste2g02411 696 Gene3D - 100 165 IPR036893 GO:0003677|GO:0005634
Pste2g02411 696 Pfam SBP domain 104 178 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02411 Pste-Chr2 24300329 24306114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02411 6 639 SBP-box Gene Family AT5G18830 50.150 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste2g02411 SBP 1.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02411 2 24300329 24306114 Pste2g02411 2 24300329 24306114 ECH