LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02411	TTTGGAGAGGGCGCGTGAAAGGAAAAGGAGAGCGCGTAGGGGAGAAAACTTGCAAATGTGGCCACGATGACCCCATCGATCATCAGAAAGAAGAAAGCCGCCGTTTCTTCCATTCTCCGCCAAACATCCAACGACCCCTAACAAACACTGCAAGACTACAATTGAATTAGGGTTTCCAATTTGGAAAATCCAAAATCCATGGAACCCCATTCTCCCCCTCCCTCCATGGATGACATCGAAGACCCTTCATCGATTTGGGACTTCTCCTACCTACTTGACTTCAACCTCGAAGAAGAAGACACCAACTCTCTCCTTCTGCCGTTAAGCGACCCCCCCGAGATCCCTCCAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACCTGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGTGCATGTCCCGAACTCGACGCCAAGCTCGAGGACGACGGTTTGCCCGGCAAGAAACGCCCCCGCACCGCCCGTGCTTCTGCTTCTTCTCGATGCCAGGTCCCTGCCTGCCAACTCGACATCTCCGAACTCAAAGGCTACCACCGCCGACACAGGGTTTGCCTCCGCTGCGCTAATGCCGCCACCGTTATGCTCCACGGCGAGCCCAAGAGATACTGCCAACAGTGCGGAAAGTTTCACGTTTTGTCCGATTTCGACGAAGGCAAACGCAGCTGTAGAAGGAAGCTAGAGCGCCATAACACCAGAAGGCGCAGAAAGCCTCCACCCGAATCTGGAGGTGCTGCTTGTATCGAAATTGACCCTGTTACTCTAAACGAGGAAAACAGTTATGATGCGGAACCACCAAAAGATTCTTCGAATTTGAGTACCGAACTCAATGACAAAGAAGCGTCGCCGGATCGTGAAGACCAACCGGTTCCCATTATGATCTCGCCTCCTGATGCCCAGAACATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAACAAGAGTGCCTATTCCACTATGTGCCAAACAGGTCGGGTTTCATTTAAGCTTTATGATTGGAATCCAGCCGAGTTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTAGAGTTGGAGGGGTATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACGTTATGTGGATAAATTTACTCAATGACTCTTTGGAATATGTGCACAATCTTGTTGCTCCTGGGAAGATGCTATCTGGAAGAGGCACCAGACTAGTGCATCTGAATGATGTGATCTTCCATGTTATGAAAGGTTTTTTGCTGTTTTGTTTGTTCACTATGGTGCTTATCCTCCATCTTAGAGACGCACCAAAGCTACACTATGTTCATCCCACATACTTCGAGGCTGGCAAACCTATGGAGTTTGTTGCCTGTGGAAGTAACTTACAGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTAAAATGTGAGTACTGTGTACCATCTCCACATAACTGGACTGAAGACAACATTTCTTGTGCTTTTAACAATCAGTTATACAAGGTATACATCCCTCATACAGAGGAAAATCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGTACCGAAATGAAGACAGTGCAGCAAAAATTAGATGTATCTCTTCTTTCTAAATTTCAGTCTGCATTTTGTGGTTCTGTCTGCAGCTTATGTAAAGCTTTTGCACTTAATCATGCATCATCATCAGACTTACTTTTAGATATAGCATGGTTGCTTAAGGACACTAGTTCAGAAAATTTTGACAGAGCGATGACAGCTTCACAAATTCAAAGATATTGTCATTTGCTGGATTTTCTGATATGCAATGATTCAACGATAATTTTGGGGAAAATATTACCAAATTTGATAATCTTGACAGAAGGCATGAAATCGAATATTGTGATTAATTGGACGAGTGATGCTGACTTTACTCAACTTCTAAATCACATAGATAATGCTAGAAATGCTATATGTCAGAAACATCAGAAAGGTGGAGGTATAATTGTGCACTCTGAAATGGAAGACTCTAAACTTGCTCATAAATGCTCCGAAAATAAGAAGCTATCAGTTGCAGTTAGCAGTCAGGTTAGGACTATTATTTTTCTTAGTTTTCTTATCTCTGATGATGAAATACTAACACATTTTGAAGTTTTAGATTAA	2289	0.4421	MEPHSPPPSMDDIEDPSSIWDFSYLLDFNLEEEDTNSLLLPLSDPPEIPPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEDDGLPGKKRPRTARASASSRCQVPACQLDISELKGYHRRHRVCLRCANAATVMLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPPESGGAACIEIDPVTLNEENSYDAEPPKDSSNLSTELNDKEASPDREDQPVPIMISPPDAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSTMCQTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNVMWINLLNDSLEYVHNLVAPGKMLSGRGTRLVHLNDVIFHVMKGFLLFCLFTMVLILHLRDAPKLHYVHPTYFEAGKPMEFVACGSNLQQPKFRLLVSFSGKYLKCEYCVPSPHNWTEDNISCAFNNQLYKVYIPHTEENLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTVQQKLDVSLLSKFQSAFCGSVCSLCKAFALNHASSSDLLLDIAWLLKDTSSENFDRAMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTEGMKSNIVINWTSDADFTQLLNHIDNARNAICQKHQKGGGIIVHSEMEDSKLAHKCSENKKLSVAVSSQVRTIIFLSFLISDDEILTHFEVLD	696

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g02411	696	ProSiteProfiles	Zinc finger SBP-type profile.	101	178	IPR004333	GO:0003677
	Pste2g02411	696	MobiDBLite	consensus disorder prediction	169	240	-	-
	Pste2g02411	696	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	85	584	IPR044817	GO:0003677
	Pste2g02411	696	SUPERFAMILY	SBT domain	103	180	IPR036893	GO:0003677\|GO:0005634
	Pste2g02411	696	Gene3D	-	100	165	IPR036893	GO:0003677\|GO:0005634
	Pste2g02411	696	Pfam	SBP domain	104	178	IPR004333	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02411	Pste-Chr2	24300329	24306114	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g02411	6	639	SBP-box Gene Family	AT5G18830	50.150	0.0	602

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Pste2g02411		SBP	1.3e-26	No_clan

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g02411	2	24300329	24306114	Pste2g02411	2	24300329	24306114	ECH

Showing 1 to 1 of 1 entries