Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02400 ATGGAGTTCTATGACCAGGATTTCTTGGAGGAATTAATGACTCTAAGAAGAGAAACATGGGACACCATTCCAAGCACAGAAGAAAACCAGTTGTTCTTTAATGGTTGGAGTTTTGACTGTTATGATCAAAACTCTCTACCTTACATCCCAAACTCTTCTTGTGGTCAAGAAGTTCCTCAAAGTTACAACAACGACTACCCCTTCCATGAAATCTATGGCTCATTACTTGACAAATCCTCACCACAGATTATCGATTCGTACTATAGCACCCTGGATACTCCAATCAATACCCCTCCATTTTTTGGTCAAGAGGATTATCCATTGTCCATGATGGAGGAGGAGGACTCGGGTTTGCTTGGGGAAGAGCTCAAGAATTTGGAGCTGCAAACCACATGCAAAGTGGAGCCAACCCTATCAGCTGAAATGCCAGTTTTCAACACGGGAACTGGCCTGGAAAGAAAGAATCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGATTAAACGACCGGCTCTCAATGCTAAGAGCAATTGTTCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAACCTGCAACAAGAAGTAGAATTTGAGGTGGAAAGGAGTGTGGACACCCGAGTGGAAATTTGCTGTGCTGGGAAGCAAGGCTTATTACTATCTACAGTAAACACCCTGGAAGCATTAGGCCTAGAGATTCAACAATGTGTTATTAGCTGCTTCAATGATTTCTCAATGCAAGCTTCTTGTTCAGAGGAATTGGAGCAAAGAACAACGCTGAGTTCTGAAGATATAAAGCAAGCGTTGTTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGAGAATTGAACAGAGGAAGAAGAGATGCGAGTGCGCTTAGGATGGTTTTTTATTCCTCAGAACGAGTATAACGTTTGTTGGTTTTGTCTCTCACATATGCCCAAGACACAGGCTTCTTCTTTTTTTATCGAATTGCCAGAGTAAGCAGGATTCGTCCGTGTGACTCAGGCAAAGTTACCAATCATAAATGTTCATGTGGATACAATCATGTAATAATACAAATTTATGGACGAAAGCCTGGTTATTATCCCGAATGCATGTGGAGGGCTGAAGCAAAAATATTAAGACAGAAAAATAAGAGTAAAGTTCGGG 1231 0.4143 MEFYDQDFLEELMTLRRETWDTIPSTEENQLFFNGWSFDCYDQNSLPYIPNSSCGQEVPQSYNNDYPFHEIYGSLLDKSSPQIIDSYYSTLDTPINTPPFFGQEDYPLSMMEEEDSGLLGEELKNLELQTTCKVEPTLSAEMPVFNTGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEFEVERSVDTRVEICCAGKQGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEELEQRTTLSSEDIKQALFRSAGYGGRCL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02400 306 Coils Coil 201 228 - -
Pste2g02400 306 MobiDBLite consensus disorder prediction 148 167 - -
Pste2g02400 306 SMART finulus 168 217 IPR011598 GO:0046983
Pste2g02400 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 228 IPR036638 GO:0046983
Pste2g02400 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Pste2g02400 306 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Pste2g02400 306 Gene3D - 152 227 IPR036638 GO:0046983
Pste2g02400 306 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 135 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02400 Pste-Chr2 24173686 24175445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02400 153 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 62.921 4.59e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g02400 HLH 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02400 2 24173686 24175445 Pste2g02400 2 24173686 24175445 ECH