Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02390 GATGAAAACAATTTACAGCTTGAGACAGAGAGCCTTGGTTTATCTCTCTAGCTTTCCATTCTGTGTGCAGAAAGAAAAGTAGAAAAACAGTGAATACGATATCTGGAATAAGAAAAAGAGGAAGAAGGAGATGGGGATAATGAGAAGCATGAGATCGAGGTCGAATCGGGTGGAAGAAGAGTGTGTGGGGGACGGCATGAGACAGAGTTGTTGGGCGAACATGCCCCAAGAGCTTCTCAGAGAGGTTCTCCTCCGAATCGAGGCCTCCGAGGACACCTGGCCGCCGCGTAAGACTGTCGTCGCCTGCGCCGGCGTCTGCCGCAGCTGGAGACAAATCACCCTAGACATTGTCAAAACACCCGAGCTTTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTACGGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATATTATTTGTTTCTCAGTTTAACTAGTACACTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGATGCTGATGATATGTCAAAGGGAAGCAACTCTTATGTTGGGAAACTGAGGTGTCGTGTTGATTGGGCACTGTGA 646 0.483 MGIMRSMRSRSNRVEEECVGDGMRQSCWANMPQELLREVLLRIEASEDTWPPRKTVVACAGVCRSWRQITLDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLADDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRCRVDWAL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02390 171 Gene3D Tubby Protein; Chain A 85 167 IPR025659 -
Pste2g02390 171 PANTHER TUBBY-RELATED 14 164 - -
Pste2g02390 171 SUPERFAMILY F-box domain 23 72 IPR036047 GO:0005515
Pste2g02390 171 SUPERFAMILY Tubby C-terminal domain-like 77 166 IPR025659 -
Pste2g02390 171 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Pste2g02390 171 PRINTS Tubby superfamily signature 159 171 IPR000007 -
Pste2g02390 171 Pfam F-box domain 28 75 IPR001810 GO:0005515
Pste2g02390 171 Gene3D - 21 83 - -
Pste2g02390 171 Pfam Tub family 89 164 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02390 Pste-Chr2 24095243 24098150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02390 8 164 TUB Transcription Factor Family AT2G47900 67.081 1.10e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste2g02390 Tub 5.6e-25 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02390 2 24095243 24098150 Pste2g02390 2 24095243 24098150 ECH
Pste6g04203 6 31247423 31253245 Pste2g02390 2 24095243 24098150 PCT