Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02389 ATGAAAAGTCGTTCCACAAGGCTGGTGAATCTAAAGCAAGTTTCTCCCAAGGTCCCTACAGGAAACTATCCAGTGGCTCATATCTCATATGAATTGAATGTTCTAGGCTCCAGGGGGCCTAGGAGAATGCACTGTGTCATGGATTCAATTCCTGCCTCTGCAATTGAACCTGGAGGTGTAGCACCCACACAGACTGAGTTTTCTCTTAATAACATAGACATGTTTCCTTCATTCTCCTTCTTTCGATCAAGATCGAATCGTGTGGAAAATTCTGTGTCTGGACCATTGGTTGATCAAAAGGGTGAGATGCTAGTGTTGAAAAATAAGGCCCCTAGGTGGCATGAGCAGCTGCATTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCCTCCGTTAAAAACTTTCAGTTGGTCGCTTCTGCAGAAAATGGGCCTGCTGGACCAGAACATGATAAGATTATCCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGACTACCGGTACCCTATTTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGACATGTTTAAACAGATTATATAGCTCTCTCTCTCGCTGCTGGGAAAAGTATGGTTTGAATGTATTTCACGTGTTGGGATTGGGAAGCGGACAGATGAAAAGAAAAATGTTCGGTAAGGTGATTGATTAGATGGGTGTTGAACTGAATTCAAAACGGGCCATTCAGTTTCTGGGATCACAATCATCAGCACTTCGGAAGATAACATGAAATTGAAATTGGAACTCCTCCACCCTCACCCCACAAAACAAAACACAAAGGGAAAAATACATTTATTCTGGTTGTACATAAATTGTCTCTCATTTTTTCTTTGAACATTTGGTTGTTTATGGTAATATAGTAGTGGTTTATAACGTGTCCGCCACAAGACATGTTTTGTTAATGTGACTACTAGCTAGCTTTCAACTTATCCATTTTCATGATAACATGTGGGACCTACTTGCAAAAACACAAGCGCAAGCAACTTGCTATGTGCAACTCCTTTCATTCCATATTCCACTCTTAACTTGGTCTTTCGAAAACTGTAACACACTAGATGTATTATTCTCTGATTTAGGAATAAGATAATGTTTGTGTC 1158 0.405 MKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTQTEFSLNNIDMFPSFSFFRSRSNRVENSVSGPLVDQKGEMLVLKNKAPRWHEQLHCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02389 194 ProSitePatterns Tub family signature 2. 179 194 IPR018066 -
Pste2g02389 194 Pfam Tub family 6 189 IPR000007 -
Pste2g02389 194 SUPERFAMILY Tubby C-terminal domain-like 9 194 IPR025659 -
Pste2g02389 194 PRINTS Tubby superfamily signature 151 170 IPR000007 -
Pste2g02389 194 PRINTS Tubby superfamily signature 106 123 IPR000007 -
Pste2g02389 194 PRINTS Tubby superfamily signature 172 194 IPR000007 -
Pste2g02389 194 PRINTS Tubby superfamily signature 124 140 IPR000007 -
Pste2g02389 194 PRINTS Tubby superfamily signature 22 49 IPR000007 -
Pste2g02389 194 PANTHER TUBBY-RELATED 12 192 - -
Pste2g02389 194 ProSitePatterns Tub family signature 1. 124 137 IPR018066 -
Pste2g02389 194 Gene3D Tubby Protein; Chain A 3 188 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02389 Pste-Chr2 24093136 24095112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02389 2 194 TUB Transcription Factor Family AT2G47900 78.351 4.36e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste2g02389 Tub 3.2e-70 CL0395