Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02377 CGAGTGAGAATGGGCCCAGAGCGGCGGCAAAATCCATTTCCACATCAATGGCGGGAAATCCCCATTTCCATTGGGGTTGTAACCGCACATCTACTCTCTCAATCGAACGGCTACAAATTCCGCAACCACATAACTAGACTGCCACTTCAAACTCAGAAGACTCTTTCGGTCTCTTTACACCACCAAACCAAACCCTCGCTCTTGATTTCAGAATCCATGGCGAGACTTTCCAAGCCACAGTCATCTTCTGACGAAGCGCTCTCCAATGGTTCGAGTTCGTCCGAGGACGAAGAGCAGCTCAACGAACAGATCAACGAAGAGGAGGACGAAGAGGAGCTCGAGGCGGTGGCGCGTCCAGCCAGTTCCGACGACGATGACGACGAAGGCGCCGGCGAAAATCCGCCAGACTCCGATGAAGACCCCGCGGTCGGTGATGACGCCGACGATGATCAGGGTGGGGATAGTATTGATCCCGAAATTAGCAAACGAGAGAAGGCTAGATTAAGAGAAATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATACTAGATGCGCAAAATGCGGCCATTGACGCCGACATAAACAAGAGAGGAAAGGGGCGTCTTAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGGGATCAGTCTTCGTCTCAGAACTCAAGGGGAAGGGGTCGCCATGCATCCAAAGTCACTGAGGAAGAGGAAGACGAAGAATACCTAAAAGAAGAAGAAGATGGTGTAGCAAACACACGTTTGGTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTAGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGAAACCCTGATGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGGAGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTACTATCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGACGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACATAAGGTACTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCACTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAGCGCCTTCTAAACATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTCATATTTTCACAGATGACTAGGCTGCTAGACATTCTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGTATTGATGGAAATACGGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCAACTCGTGCTGGGGGTCTTGGTATTAATCTGGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGTACCGAGTATACAATTGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGTTGAGAACAGATTTGATATAAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATATTTCAAACAAACAATGCGCCAAGGTGGTCCTACTAAACCAAAGGAACCCCGTATTCCTAGGATGCCCCAGTTACATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTATATGAAAAGGAAGTGCGCTATCTCATGCAAACGCACCAGAAGAATCAAATAAAGGACTCAATAGATGTTGACGAACCTGAAGAGGTGGGAGATCCATTGACCGCTGAAGAGTTGGAAGAGAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGGGATTTTAATACTTTCATCAGAGCCTGTGAAAAATATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGTGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTGGCAAGGAGGTGTGACACCCTCATCCGACTGGTGGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGAAAAGAGAAGAAACTTGCTAAAAGTATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTGACCATGGATGATTATGCAAGCACGGGGAAGAGAAGAAAATAAATAGACATCCTCTATATTGCAAAGTAAGGGGTGCTGGGTTTTAAAAGCCTCATTGATTTTCATGTGGCCCAGACATGACCATTGATGGTTAGGCTTGCCTTCCGAAGACGGTGCTTACCAATCTATTTTATTTATGTATTGTAGGCTCCAATTGTCAGTTGTATGGCTAGTTAGAGAATACTATGCAGAAATCAGATGTTGTAACATGTAAGTATGTAAATCTACAAAAAAGTCCTTCGATTTGAACGGCTAGTTCGATGAAAATATGTAATTTAGCTTTATACAATTTGAAGTAGACATGCATTATGATTAATCTAACGTTTGGAAAATCGTGTAGGCCATTGAGTTTGTGATTTCCAGCTCCAATTTGACGTCAAATTATGTTTTTACTTACATGTAATAATTATATATGATTATACAAGGAAAATATTCTGGAGAG 3874 0.4182 MGPERRQNPFPHQWREIPISIGVVTAHLLSQSNGYKFRNHITRLPLQTQKTLSVSLHHQTKPSLLISESMARLSKPQSSSDEALSNGSSSSEDEEQLNEQINEEEDEEELEAVARPASSDDDDDEGAGENPPDSDEDPAVGDDADDDQGGDSIDPEISKREKARLREMQKMKKQKIQEILDAQNAAIDADINKRGKGRLKYLLQQTELFAHFAKGDQSSSQNSRGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKVENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSSLKKRKQLTMDDYASTGKRRK 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02377 1141 Coils Coil 1074 1101 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 825 846 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 70 158 - -
Pste2g02377 1141 CDD SF2_C_SNF 567 692 - -
Pste2g02377 1141 FunFam ISWI chromatin-remodeling complex ATPase CHR11 1005 1108 - -
Pste2g02377 1141 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 443 IPR014001 -
Pste2g02377 1141 Coils Coil 158 185 - -
Pste2g02377 1141 FunFam ISWI chromatin-remodeling complex ATPase CHR11 818 916 - -
Pste2g02377 1141 Gene3D iswi atpase 972 1004 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 96 111 - -
Pste2g02377 1141 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 917 971 - -
Pste2g02377 1141 Pfam SLIDE 974 1084 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pste2g02377 1141 SUPERFAMILY Homeodomain-like 972 1094 IPR009057 -
Pste2g02377 1141 FunFam Chromatin-remodeling complex ATPase 267 482 - -
Pste2g02377 1141 ProSiteProfiles SANT domain profile. 916 968 IPR017884 -
Pste2g02377 1141 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 829 919 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pste2g02377 1141 MobiDBLite consensus disorder prediction 1089 1105 - -
Pste2g02377 1141 CDD DEXHc_SMARCA1_SMARCA5 263 483 IPR044754 GO:0005524
Pste2g02377 1141 Pfam Helicase conserved C-terminal domain 569 681 IPR001650 -
Pste2g02377 1141 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 722 IPR001650 -
Pste2g02377 1141 Gene3D - 487 779 IPR027417 -
Pste2g02377 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 764 IPR027417 -
Pste2g02377 1141 SMART sant 1019 1080 IPR001005 -
Pste2g02377 1141 SMART sant 917 966 IPR001005 -
Pste2g02377 1141 Pfam SNF2-related domain 279 546 IPR000330 GO:0005524|GO:0140658
Pste2g02377 1141 SMART ultradead3 262 454 IPR014001 -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 1089 1141 - -
Pste2g02377 1141 SUPERFAMILY Homeodomain-like 920 970 IPR009057 -
Pste2g02377 1141 SMART helicmild6 597 681 IPR001650 -
Pste2g02377 1141 Gene3D - 267 482 IPR038718 -
Pste2g02377 1141 Pfam HAND 830 912 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pste2g02377 1141 MobiDBLite consensus disorder prediction 213 246 - -
Pste2g02377 1141 Gene3D - 1005 1108 - -
Pste2g02377 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 481 IPR027417 -
Pste2g02377 1141 CDD SANT 920 964 IPR001005 -
Pste2g02377 1141 Gene3D - 917 971 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 213 227 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 122 151 - -
Pste2g02377 1141 FunFam ISWI chromatin-remodeling complex ATPase CHR11 487 779 - -
Pste2g02377 1141 Coils Coil 91 111 - -
Pste2g02377 1141 Gene3D ISWI, HAND domain 818 916 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pste2g02377 1141 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 163 1126 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 1119 1141 - -
Pste2g02377 1141 MobiDBLite consensus disorder prediction 70 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02377 Pste-Chr2 23986040 24002203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02377 287 708 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.91e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste2g02377 SNF2_N 9.8e-72 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02377 2 23986040 24002203 Pste2g02377 2 23986040 24002203 ECH
Pste6g04185 6 31110637 31120110 Pste2g02377 2 23986040 24002203 PCT