Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02277 GTGCCATCTCCTTCTTCACAACCCATCCAAAAGGTTCCCTTCTACAAGCTCTTCAGTTTTGCGGATCGTTTTGATGTGGCCTTCATGACCATTGGCACCATCTCTGCCATGGCTAATGGCTGGTCGCAACCTCTCATGACCCTCATTTTAGGGAAACTTATCAACACTTTTGGCTCCACCCATCCATCAAATACTATCAAGCAGGTTTCTAAGGTTGCATTATTATTTGTTTACCTGGCTATTGGAACTGGAATTGCGGCGTTCCTTCAAGTAGCATGTTGGATGGTAACAGGAGAAAGACAAGCCGCAAGGATCCGTGGCTTGTACTTGAAAACTATATTGAAGCAGGACATTGCTTTCTTTGACACTGAAACAACAACTGGTGAGGTAATTGGGAGGATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAGCTTGCTTCAACTTTTATTGGTGGTTTTGTGATTGCATTTGTAAGAGGATGGCGACTGGCTGTTATTTTGCTGGCATGCATACCATGTGTTGTTGTTACCGGTGGAATTGTGTCCATTTTGATGAGTAAAATGGCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTAGTTGAACAAACTGTGGGATCTATTAAAACAGTGGCATCTTTCACTGGCGAGAAAAAAGCAATAGAAAAGTATAATATAGAGTTAAGGGTTGCTTATAAAACAATGGTTCAACAAGGGATGGCCTCGGGGTTGGGATTGGGAGTACTCCTATTGATTATCTTCTGCACCTATGCACTTGCTATGTGGTATGGTTCTAAACTTGTCATTGAGAAAGGATACAAAGGTGGAACCGTCATCACCGTAATTGTAGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCCCCAAGCGTAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAACAATTGACGCCTATGATACCAGTGGTGTTGTCTTGGAAAACATTAATGGAAATATTGAACTCAAAGATGTTTACTTTAGTTACCCTGCAAGGGCAGATGTGCAGATCTTTACTGGATTATCATTGTATGTTCCCAGTGGCACAACTGTTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTGATCAGTTTATTGGAAAGATTTTATGATCCGGATGCTGGAGAAGTACTCATAGATGGTGTGAATTTGAAGGATTTTCAAGTTAGATGGATAAGAGAACAAATTGGTCTGGTTAATCAAGAACCTATCCTCTTTGCAGCTAGTATCAAAGAGAATATAGCCTATGGAAAGGAAGGAGCAACTGATGAGGAGATAACAACAGCAATGACTCTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCGGGGCCTTGAGACATTGGCTGGCCAGAATGGAACTCAACTTTCTGGTGGGCAAAAACAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTAGATGCTGAGTCTGAACGTGTAGTTCAAGAAGCATTAGAACAAGCTATGTCCAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACTACTATTAGAAATGCTGACATCATAGCCGTGGTTCATCAAGGCAAAATAGTGGAGCAAGGAACTCATGATGAGTTAATGAAGGATGTTGATGGTGCTTATTCTCAACTTATTCGTTTACAAGAAAGAGCTAAGGAAGCTGAAGGTAGCCATAATTCTGAAGCAGAGAAGTCAAGTAACAGTTTTAAGTTAGATAGTCGGATGGCTAGATCTTCTTCCCAGACAGCGGTTTCAACAAGCAGAGCTTCATCAGGTAGATACTCCCAGTCACATAGCTTTGTTCTTTCTGATCATGGGGAACATGAATCTGGAGGAATAGCAGACAGGAGGGATATTGAAAAGAGTGAAGTTGATACTAAGAATTCTAGAAAGGTTTTTTTAAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTATCTTAGTGCTTGGATCCATTGCTGCAATAGTACAAGGTGTTGTGTTCCCTATGTTTGGTTTCTTGTTTTCCTCCGCAATTATTACGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTCCTATATGTGGGTTTGGGTTTAGTTACTCTGGTGACTATACCAGTGCAAAATTACTTCTTTGGCATAGCTGGTGGAAAATTAGTAGAAAGAATTCGTTCATTGACATTTGAAAAGGTTGTGCACCAAGAGATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTGTCCACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGATACATTGGCCCTCATTGTGCAAAACTTATCAACAATCATAGCAGGTCTAGTAATATCATTCACTGCTAATTGGATCCTTGCTTTCATAATTCTGGCTGTGTCACCCTTGGTCCTTTTGCAAGGAGTACTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCAAGTCAGGTAGCAAATGATGCTGTTGGTAGCATCAGAACCATTGCATCATTTTGTGCTGAATCGAAGGTGATGGATATGTATAGGAAAAAATGTTCAGAGCCAGAAAAACAAGGTGTTCGGTTAGGGCTTATTAGTGGTGCAGGATTTGGTTTCTCTTTTCTAGCTCTATACTTCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCGGAGGTTTTCAAGGTCTTCTTTTGTTTAACAATAACAGCAATTGGCATTTCCCAGACTAGTGCCATGGCACCAGACACTAACAAAGCCAAAGATTCCACAGCTTCAATATTTAAAATTCTTGACAATACACCTACCATTGATTCCAGCAGCAAGGAGGGTAGAACTCTAGAAGTCGTTGGTGGTGACATTGAACTTCAACATGTCAATTTTAATTACCCAAGTAGGCCTCATATGCACATTTTCAAAGATTTATGTCTAAGCATTCCGGCTGGAAAGACTGCCGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGATTCTGGACGTATACTACTAGATGGAGTGGATATAAAAGAGTTTAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATCCGCACCAACATAGCTTATGGTAAAGAGGAAGCAGTCACAGAGGAAGAGATAATTGCAGCAGCTAAAGCATCCAATGTACATGACTTTATAAGTGGTCTTCCAAATGGTTATGACACCAATGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAGCGCATTGCCATTGCAAGAGCCATGCTGAAAAACCCCAAAATTCTATTGCTTGATGAGGCAACTAGTGCACTTGATGCAGAGTCAGAGCGCATAGTTCAAGAGGCTCTAGATAAAGTTAGTGTGGACAAAACAGCTGTAGTGGTAGCTCATCGTCTTACAACAATTAGAGGTGCTGACATAATAGCAGTAATGAAAAATGGAGCAGTTTCTGAAATGGGAAGACATGATGAGTTGATGAAGATCCCTGATGGAGTCTACGCATCATTGTTAGCTCTACATATGAGTTCCTAG 3762 0.4133 VPSPSSQPIQKVPFYKLFSFADRFDVAFMTIGTISAMANGWSQPLMTLILGKLINTFGSTHPSNTIKQVSKVALLFVYLAIGTGIAAFLQVACWMVTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASTFIGGFVIAFVRGWRLAVILLACIPCVVVTGGIVSILMSKMASRGQAAYAEAGNVVEQTVGSIKTVASFTGEKKAIEKYNIELRVAYKTMVQQGMASGLGLGVLLLIIFCTYALAMWYGSKLVIEKGYKGGTVITVIVALMTGGMSLGQTSPSVNAFAAGQAAAYKMFETIKRKPTIDAYDTSGVVLENINGNIELKDVYFSYPARADVQIFTGLSLYVPSGTTVALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKDFQVRWIREQIGLVNQEPILFAASIKENIAYGKEGATDEEITTAMTLANAKKFIDKLPRGLETLAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADIIAVVHQGKIVEQGTHDELMKDVDGAYSQLIRLQERAKEAEGSHNSEAEKSSNSFKLDSRMARSSSQTAVSTSRASSGRYSQSHSFVLSDHGEHESGGIADRRDIEKSEVDTKNSRKVFLRRLAYLNKPEVPILVLGSIAAIVQGVVFPMFGFLFSSAIITFFEPPEKQRKDSRFWALLYVGLGLVTLVTIPVQNYFFGIAGGKLVERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLLQGVLQMKFLKGFSADAKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCSEPEKQGVRLGLISGAGFGFSFLALYFTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGISQTSAMAPDTNKAKDSTASIFKILDNTPTIDSSSKEGRTLEVVGGDIELQHVNFNYPSRPHMHIFKDLCLSIPAGKTAALVGESGSGKSTVISLLERFYNPDSGRILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRTNIAYGKEEAVTEEEIIAAAKASNVHDFISGLPNGYDTNVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDKVSVDKTAVVVAHRLTTIRGADIIAVMKNGAVSEMGRHDELMKIPDGVYASLLALHMSS 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02277 1253 SMART AAA_5 378 564 IPR003593 GO:0016887
Pste2g02277 1253 SMART AAA_5 1038 1225 IPR003593 GO:0016887
Pste2g02277 1253 FunFam ABC transporter B family member 1 1001 1251 - -
Pste2g02277 1253 Pfam ABC transporter 371 518 IPR003439 GO:0005524
Pste2g02277 1253 CDD ABC_6TM_Pgp_ABCB1_D1_like 29 312 - -
Pste2g02277 1253 ProSitePatterns ABC transporters family signature. 490 504 IPR017871 GO:0005524|GO:0016887
Pste2g02277 1253 CDD ABC_MTABC3_MDL1_MDL2 351 589 - -
Pste2g02277 1253 SUPERFAMILY ABC transporter transmembrane region 672 992 IPR036640 GO:0005524|GO:0016020
Pste2g02277 1253 SUPERFAMILY ABC transporter transmembrane region 16 332 IPR036640 GO:0005524|GO:0016020
Pste2g02277 1253 FunFam ABC transporter B family member 9 16 346 - -
Pste2g02277 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1248 IPR003439 GO:0005524
Pste2g02277 1253 MobiDBLite consensus disorder prediction 643 663 - -
Pste2g02277 1253 Pfam ABC transporter transmembrane region 690 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02277 1253 Pfam ABC transporter transmembrane region 29 300 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02277 1253 FunFam ABC transporter B family member 1 341 590 - -
Pste2g02277 1253 ProSitePatterns ABC transporters family signature. 1151 1165 IPR017871 GO:0005524|GO:0016887
Pste2g02277 1253 Gene3D ABC transporter type 1, transmembrane domain 16 609 IPR036640 GO:0005524|GO:0016020
Pste2g02277 1253 MobiDBLite consensus disorder prediction 591 663 - -
Pste2g02277 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 31 316 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02277 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 589 IPR027417 -
Pste2g02277 1253 PANTHER ABC TRANSPORTER B FAMILY 6 597 IPR039421 -
Pste2g02277 1253 Gene3D - 656 668 IPR027417 -
Pste2g02277 1253 Gene3D - 341 590 IPR027417 -
Pste2g02277 1253 Gene3D - 1001 1248 IPR027417 -
Pste2g02277 1253 FunFam ABC transporter B family member 1 669 977 - -
Pste2g02277 1253 MobiDBLite consensus disorder prediction 612 642 - -
Pste2g02277 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1249 IPR027417 -
Pste2g02277 1253 CDD ABC_MTABC3_MDL1_MDL2 1011 1246 - -
Pste2g02277 1253 Gene3D ABC transporter type 1, transmembrane domain 979 1000 IPR036640 GO:0005524|GO:0016020
Pste2g02277 1253 Gene3D ABC transporter type 1, transmembrane domain 669 978 IPR036640 GO:0005524|GO:0016020
Pste2g02277 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 587 IPR003439 GO:0005524
Pste2g02277 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02277 1253 Pfam ABC transporter 1030 1179 IPR003439 GO:0005524
Pste2g02277 1253 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 994 - -
Pste2g02277 1253 MobiDBLite consensus disorder prediction 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02277 Pste-Chr2 22923142 22928941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02277 1 1250 Calmodulin-binding Proteins AT2G36910 44.532 0.0 1059