Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02275 ATGGCACAGAAGGCTGAGGCCAAAGATGAAAAACAAAGGGTCAAAGTCGAAGGAAAAGTTCCATTTTACAGGCTTTTCACCTTTGCAGATAACTTTGACATGACTTTTATGATCATTGGTTTCATCTCTGCCATGGCTAATGGGATGGCTCAGCCTCTTATGACCGTCATTTTTGGGAAACTTATCAACGCCTTTGGCTCTTCCGATCCATCCCACATTGTCAGGGAAGTCGGTAAGGTTGCATTATTGTTTGTTTATCTGGCTTTTGGGGCTGGAATTGCCTCTTTCCTACAGGTATCTTGTTGGATGGTGACAGGAGAAAGACAAGCAGCAAGGATCCGTGGCTTGTACTTGAAAACTATATTAAAGCAGGACATTGCCTTCTTTGACACTGAAACAACAGCTGGTGAGGTAATTGGGAGAATGTCAGGTGATACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAGCTTCTTACATCCTTTTTTGGTGGCTTTGTTATCGCCTTTACAAAAGGATGGGAACTCTGTCTAGTATTGCTTGCATGCATTCCTTGTATTGTTGTTGTGGGTGGAATTATGTCCATGATGATGGCAAAAATGTCAACTCGTGGGCAAACTGCTTATGCAGAAGCTGGAAATGTTGTAGAACAAACAGTTGGAGCCATTAGAACAGTTGCCTCTTTTACTGGTGAGAAAAAAGCAACAGAAAAATATAACAACAAGTTAAGAATTGCTTACACTACAACTGTTCAACAAGGGTTGGCCTCAGGGTTTGGAATGGGAATACTTTTGTTGATTATTTTCTGCACCTATGCACTTGCCATGTGGTATGGATCCAAATTGATCATTGAGAAAGGCTATAATGGTGGAAACGTCTTCAATATAATCATATCAATCAATACTGGTGGAATGTCACTTGGTCAGGCAGCCCCATGCGTAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAGCCAAAAATTGATGCTTATGACACCAGTGGTGTTGTCTTGGAAGACTTAAAGGGAGATATTGAACTCAAGGATGTTTACTTTAGATACCCTGCAAGGCCAGATGTTCAGATCTTTTCCGGATTCTCATTCTATATTCCAAGTGGCAAAACTGCGGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCCACTATAATCAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTGCTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGCTCAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTGTCCTGTTTACAGCTAGTATTAAAGAGAACATAGCATACGGGAAAGAAGGTGCAACAGAAGAGGAGATAACAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGATAAGCTGCCTCAGGGCATTGACACCATGGTAGGAGGGCATGGAACTCAACTTTCAGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAAAATCCTTCTTCTTGATGAAGCTACTAGTGCATTGGATGCTGAGTCAGAACGTATTGTTCAAGAAGCATTGGAAAAAGTCATGACACAAAGGACAACTGTAGTTGTTGCCCATCGTTTGACAACTATTAGACATGCTGACATCATAGCAGTGGTTCATCAGGGCAAAATTGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTCATTCGTTTACAAGAAGGAAATAAAGAAGCGGAAGGGAGCCATAAATTAGAAGAAAATAAGTCAAACAACAACAGCTTCAACTTAGATAGTCATAATGCTAGTGGTAGATCTTTAACTAAGAGAACATCCTTTGCACGATCAATAAGTCAAGGCTCATCAAGTAGTAGACACTCTCTCTCACTTGGCTTCGCTCTTCCTTATCAAATTTCTCTGAACGAGTCTAGAGAACGAAATAGTGGGGACATTGAGAGTACTGAAGTAGATAATAAGAACCAAAAGGTTCACATTAGCCGTTTGGTCAAGTTAAACAAGCCAGAAGTTCCCGTCTTATTACTAGGATCCATTGCTGCAACAATACATGGTGTTACTCTCCCCGTATTTGGACTCTTGCTTTCATCAGCTATTAACGCGTTCTATAAACCTCCAGATCAGCTTAGGAAAGATTCTGTGTTTTGGTCACTTCTATTTGTTGGTTTGGGGGTTGTGGTTCTGGTGGCCATACCAGTGCAAAACTACTTATTTGGGATAGCTGGTGGAAAGCTTATAGAAAGAATTCGTTCGTTGACATTTAAAAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCGTCCTACAAATTCAAGTGGTGCAGTTAGTGCAAGGTTAGCTACTGATGCTTCAACAGTGAGAAGTCTAGTGGGCGACAGTTTGGCCCTCATTGTGCAGAACATAGCAACAATGTCATCAGGTCTAATTATAGCATTCACAGCTAATTGGATTCTGGCTTTTGTAATTCTGGCTGTGTCACCCTTGTTACTTATACAAGGATATCTTCAGACCAAGTTTGTAGAAGGATTCAGTGCAGATGCAAAGGTGATGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGTCAAAGGTGATGGATATGTACAGGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGCAAGTGGTGCAGGATTCGGTTTCTCTTTTATAGCTCTATACTGCACAAATGCTTTCTGTTTTTACATAGGAGCTATTCTAGTGCAACACGGGAAAGCAACGTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAATTACAGCAGTTGGTGTTTCCCAAACTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAGCCTCAATATTTGAAATCCTTGATAGCAAACCAACTATTGACTCCAGCAGTGATGAGGGCACAACACTAGACACTGTAAAAGGTGACATTCAACTCCAACAAGTCAGCTTTTGTTACCCAACAAGACCTAATATTCAAATTTTCAAAGACATGTGTTTAAGCATGCCAGCTGGAAAGACGGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTGGAGAGATTCTACAACCCTGATTCTGGACAGTTACTACTTGATGGAGTGGATATAAAAAAGTTAAAACTAAGCTGGCTGAGGCAACAGATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGATAGCCTTCGTGCCAACATAGGCTATAGCAAAGAGGGAGGGGCCACAGAGGAAGAGATAATTGCAGCAGCAGAAGCAGCGAATGCACACAAGTTCATAAGTTCTCTTCCAAATGGCTATGACACCAATGTTGGAGAAAGAGGCACACAGTTGTCAGGAGGACAAAAGCAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAGAATACTTTTGCTGGATGAGGCAACTAGTGCACTTGACGCTGAATCAGAGCGTGTGGTTCAAGAGGCTCTAGATGGAGTCAGTGTCAACAGAACTACTGTTGTGGTGGCTCACCGTCTTGCAACAATTAAAGGCGCTGACATTATAGCAGTGGTGAAAAATGGGGCCATTGCTGAGAAGGGAGGACATGATGCATTGATGAAGATTGATGGTGGAGTTTATGCTTCATTGGTAGCTCTCCATATTAGTGCATCATAGTTACTAGGATCAATGTTCTGCCACCATGTAATGAGTTGCTTGTTCAGGCACACCAGTAAATAAGGTCAAATTTTGCAAATTCTTAGATACTATCCTTTAGCATCATTTTTGTATGCTTGTATCATTAATTTTATTTCAATAACATTCTC 3956 0.4143 MAQKAEAKDEKQRVKVEGKVPFYRLFTFADNFDMTFMIIGFISAMANGMAQPLMTVIFGKLINAFGSSDPSHIVREVGKVALLFVYLAFGAGIASFLQVSCWMVTGERQAARIRGLYLKTILKQDIAFFDTETTAGEVIGRMSGDTILIQDAMGEKVGKFIQLLTSFFGGFVIAFTKGWELCLVLLACIPCIVVVGGIMSMMMAKMSTRGQTAYAEAGNVVEQTVGAIRTVASFTGEKKATEKYNNKLRIAYTTTVQQGLASGFGMGILLLIIFCTYALAMWYGSKLIIEKGYNGGNVFNIIISINTGGMSLGQAAPCVNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDLKGDIELKDVYFRYPARPDVQIFSGFSFYIPSGKTAALVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWLREQIGLVGQEPVLFTASIKENIAYGKEGATEEEITTAITLANAKKFIDKLPQGIDTMVGGHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALEKVMTQRTTVVVAHRLTTIRHADIIAVVHQGKIVEKGTHDELIKDVDGAYSQLIRLQEGNKEAEGSHKLEENKSNNNSFNLDSHNASGRSLTKRTSFARSISQGSSSSRHSLSLGFALPYQISLNESRERNSGDIESTEVDNKNQKVHISRLVKLNKPEVPVLLLGSIAATIHGVTLPVFGLLLSSAINAFYKPPDQLRKDSVFWSLLFVGLGVVVLVAIPVQNYLFGIAGGKLIERIRSLTFKKVVHQEISWFDRPTNSSGAVSARLATDASTVRSLVGDSLALIVQNIATMSSGLIIAFTANWILAFVILAVSPLLLIQGYLQTKFVEGFSADAKVMYEEASQVANDAVGSIRTVASFCAESKVMDMYRKKCSGPEKQGVRLGLASGAGFGFSFIALYCTNAFCFYIGAILVQHGKATFGEVFKVFFALTITAVGVSQTSALAPDTNKAKDSAASIFEILDSKPTIDSSSDEGTTLDTVKGDIQLQQVSFCYPTRPNIQIFKDMCLSMPAGKTVALVGESGSGKSTVISLLERFYNPDSGQLLLDGVDIKKLKLSWLRQQMGLVGQEPILFNDSLRANIGYSKEGGATEEEIIAAAEAANAHKFISSLPNGYDTNVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDGVSVNRTTVVVAHRLATIKGADIIAVVKNGAIAEKGGHDALMKIDGGVYASLVALHISAS 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02275 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 597 IPR027417 -
Pste2g02275 1268 FunFam ABC transporter B family member 1 683 991 - -
Pste2g02275 1268 Gene3D - 357 630 IPR027417 -
Pste2g02275 1268 SMART AAA_5 1052 1239 IPR003593 GO:0016887
Pste2g02275 1268 SMART AAA_5 386 572 IPR003593 GO:0016887
Pste2g02275 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 320 - -
Pste2g02275 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1262 IPR027417 -
Pste2g02275 1268 Gene3D ABC transporter type 1, transmembrane domain 83 999 IPR036640 GO:0005524|GO:0016020
Pste2g02275 1268 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Pste2g02275 1268 SUPERFAMILY ABC transporter transmembrane region 19 343 IPR036640 GO:0005524|GO:0016020
Pste2g02275 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1008 - -
Pste2g02275 1268 CDD ABC_MTABC3_MDL1_MDL2 1025 1261 - -
Pste2g02275 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Pste2g02275 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 990 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02275 1268 SUPERFAMILY ABC transporter transmembrane region 691 1009 IPR036640 GO:0005524|GO:0016020
Pste2g02275 1268 FunFam ABC transporter B family member 9 24 354 - -
Pste2g02275 1268 MobiDBLite consensus disorder prediction 612 651 - -
Pste2g02275 1268 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524|GO:0016887
Pste2g02275 1268 Gene3D - 1015 1267 IPR027417 -
Pste2g02275 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02275 1268 MobiDBLite consensus disorder prediction 601 651 - -
Pste2g02275 1268 PANTHER ABC TRANSPORTER B FAMILY 3 599 IPR039421 -
Pste2g02275 1268 Pfam ABC transporter 379 526 IPR003439 GO:0005524
Pste2g02275 1268 FunFam ABC transporter B family member 1 1015 1265 - -
Pste2g02275 1268 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Pste2g02275 1268 Pfam ABC transporter 1044 1193 IPR003439 GO:0005524
Pste2g02275 1268 FunFam ABC transporter B family member 1 349 598 - -
Pste2g02275 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1262 IPR003439 GO:0005524
Pste2g02275 1268 Pfam ABC transporter transmembrane region 704 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g02275 1268 Pfam ABC transporter transmembrane region 37 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02275 Pste-Chr2 22904219 22909631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02275 9 1264 Calmodulin-binding Proteins AT2G36910 44.339 0.0 1062