Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02247 GAAAGGTCGTTTTTTCACTTTATAAATACCCAATTCTATGGCAAGTTTGCTTTTATTTTCTGATATCTCCTTCCTGTTCTGATAAGTGGAAAAACAAGAGGGAAAGAAAGAAAATTAATTCAAGGGCTAGCTGAAACATCTGCTGCGTCCTTAATTATATTCTCCTTTTGTTAATTTCCTCACCAGGTTGCAAAGATGGCTTTTCCAAACCCATCTATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAAAACACCACCAATCGCCAAGTCACCTTTTGCAAGCGCAGAAATGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGCGGACGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAAAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTCTTTGGGCTCTATGACTGCCAAGGAACTCAAAAACCTGGAGAGTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTTCTATTTGCTGAAATAGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACCATAACATGGCTGTGCTGCCTGGAGGCTCAAACTATGACTCTATACAGTCTCAGCAGCAATTTGACTCTCGTGGCTATTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCACGGCAAGATCAGATGTCCCTTCAATTAATGAATGCTAAGGGTAATGTACGCAGAACCATCTGCAGGGGATTTAAGCATTTTCTGAGTACTATATATGTAATGGCATTGTAG 924 0.4123 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQSLGSMTAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHHNMAVLPGGSNYDSIQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLMNAKGNVRRTICRGFKHFLSTIYVMAL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02247 242 Coils Coil 113 133 - -
Pste2g02247 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Pste2g02247 242 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Pste2g02247 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 174 - -
Pste2g02247 242 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pste2g02247 242 ProSiteProfiles K-box domain profile. 74 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g02247 242 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Pste2g02247 242 Pfam K-box region 103 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g02247 242 FunFam agamous-like MADS-box protein AGL11 28 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02247 Pste-Chr2 22583043 22591872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02247 14 216 MADS-box Gene Family AT3G58780 60.000 5.49e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste2g02247 K-box 7.1e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02247 2 22583043 22591872 Pste2g02247 2 22583043 22591872 ECH