Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02246 TGGTCCTTTTCCATTCTTTATACAGACACACACAAAAAAGAAAAGAAAAACTACGTTTTCCATTCACTTCCTTCCCATCTCTCTCTCTCCTCTGCCATATATGATCCAATATATTATAATACAATAGAACCAACAACTGTGACAGACACTCTGAGAAGTACCTCTTTTAAGTTTGTAGTTTCATTCTCCTTCTCTCTTTCATTCATGTCCAGCTGATCTCAAAGCTCTTCTACCGCTACCCTTTAATGAAACCTCTTGCTTTGTTTTGTTTGCGTCATTGAAAATAAACAAAAATAATAAATTGGGTTGGATTTGGAAGGGATGATGGCGGTGAGTTCTGCCTGCAAAGATGGGAGCAAGGTGGCAATGGACAACGGCAAGTATGTGAGGTACACACCCGAACAGGTTGAAGCACTGGAAAGGCTTTACCATGAATGTCCCAAACCAAGTTCCCTTCGCCGCCAACAACTCATCAGAGAGTGTCCCATTCTCTCCAACATCGAACCCAAGCAGATCAAGGTCTGGTTCCAAAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTGTATGAAAACAGCTTTTTCCGCCAACAGACACAGAACGCGACCCTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGCACTTGACACCGCAGCATCCACCAAGAGATGCTAGCCCTGCAGGGCTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTAGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGAGAGGCTCTCATGGTTTCGTGATTGCCGAACTGTAGATGTTCTAAATGTGATGTCCACAGGAAATGGTGGAACCGTTGAGCTGCTTTATATGCAGTTGTATGCACCAACAACTTTAGCACCTGGTCGTGACTTCTGGTTGTTGCGCTACACATCACTTTTGGAGGACGGTAGTCTTGTGGTCTGTGAAAGATCACTCAACAACACTCAAAATGGTCCTGCTATGCCCCCTGTACAGCATTTTGTTAGAGCTGATATGCTGCCAAGCGGGTATCTGATAAGACCTTGTGAAGGAGGGGGGTCCATTATTCATATTGTTGATCATATGGTTCTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGCTACTTGCTCAGAGGACGACTATGGCAGCCTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAACCAAGTGTAACAGGATGGGGAAGAAGGCCAGCAGCCCTACGTGCGCTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGACGATGTCACCCTTCTTGTGAATTCCTCACCTAGCAAGATGATGGGAGTAAACCTTGGTTATAACAATAGTGGATTTCCTTCTGTCAACAGTTCGGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTCCCTCCGGCAATTCTTCTTAGATTCTTGAGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGGCCCTGTAGCTTGCCAGGGGCCCGATCAGGAGGTTTTGGGGGTCAGGTTATTCTACCGCTAGCTCACACAATTGAGCATGAAGAGGCAAGTCATTTGCTTCTAATATTTTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTACAGGGACGACATGACTATACCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGACGAGCATGCAGTTGGCACAAGTGCAGAACTTATTTTTGCTCCAATAGATGCGTCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGGATTATACCTCTTGATTCTGGCACTGATGCTGCTAGTCCAAATCGTACACTTGATCTGGCCTCTGCACTTGACGTTGGAAATACAGCAAACAAAGCAGCTGGTGACACCTCAGGTCGTTCTGGGAGCACAAAGTCTGTGATGACAATAGCGTTCCAGTTTGCATTTGAAGTCCACCTTCAGGAGAACATAGCAACCATGGCCAGACGATATGTTCGCAGTATCATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCACGTTTTGGTTCTCATAATGCTTTTCACTTACCACCTGGCACTCCAGAGGCTCAAACACTTGCTCGATGGATCTGTAACAGCTATAGGTTCTATCTAGGAGTAGAACTTCTAAAATGTGAAGGCAGTGAATCCATTCTCAAGTCTCTTTGGCATCATTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCATTACCTGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAAACAACTTTGGTTGCACTTCAAGACATCACACTGGAAAAGATTTTTGATGACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGAATCTGTTTATCCAGCATGGGGAGGCCAGTATCATATGAGAGAGCAGTTGCATGGAAAGTATTAAACGAGGAAGAATCCGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGATAAGATTAAACAGTATAGGATGTAGAAAAGATAAGTAGAGCACAAGAGTACCTTACTTTGCCGAATCTTTAGAACGCTTTATATTATAGTGGGCTTATGCGCCACCAAGATCTATCTATGGTCCCATCTGTCTTTTCATCATCGCTCCTTATTTCTTTTATGCTTCTTTGATATTCGTGCGTAATACTTTTTCTTTTTTTCTTATGAGCATTACATAACTTGCCACCAATCTTAACAAAGGAAATTCCAGTGGG 3122 0.4504 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKERLSWFRDCRTVDVLNVMSTGNGGTVELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGVNLGYNNSGFPSVNSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARSGGFGGQVILPLAHTIEHEEASHLLLIFFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGTDAASPNRTLDLASALDVGNTANKAAGDTSGRSGSTKSVMTIAFQFAFEVHLQENIATMARRYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02246 848 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Pste2g02246 848 CDD bZIP 72 111 - -
Pste2g02246 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 848 IPR044830 GO:0003700
Pste2g02246 848 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Pste2g02246 848 Coils Coil 75 116 - -
Pste2g02246 848 Gene3D - 11 86 - -
Pste2g02246 848 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Pste2g02246 848 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Pste2g02246 848 SUPERFAMILY Bet v1-like 163 374 - -
Pste2g02246 848 CDD START_ArGLABRA2_like 158 373 - -
Pste2g02246 848 Gene3D - 197 379 IPR023393 -
Pste2g02246 848 Pfam START domain 164 372 IPR002913 GO:0008289
Pste2g02246 848 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Pste2g02246 848 SMART START_1 163 373 IPR002913 GO:0008289
Pste2g02246 848 CDD homeodomain 20 80 IPR001356 GO:0003677
Pste2g02246 848 Pfam MEKHLA domain 707 847 IPR013978 -
Pste2g02246 848 SMART HOX_1 17 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02246 Pste-Chr2 22553120 22559472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02246 16 848 Homeobox Transcription Factor Family AT4G32880 79.833 0.0 1386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste2g02246 START 6.5e-51 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02246 2 22553120 22559472 Pste2g02246 2 22553120 22559472 ECH